Results 21 - 40 of 267 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5611 | 3' | -55.1 | NC_001806.1 | + | 1803 | 0.66 | 0.942902 |
Target: 5'- cGUGCGCACgCGGuagcgcacguuGCCGcCGCGGCa -3' miRNA: 3'- cCACGCGUGgGUUu----------UGGUcGCGCUGg -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 3913 | 0.66 | 0.942902 |
Target: 5'- --cGCgGCGCCCGAGAuCCGGaaGCaGGCCu -3' miRNA: 3'- ccaCG-CGUGGGUUUU-GGUCg-CG-CUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 84304 | 0.66 | 0.942902 |
Target: 5'- uGGUGCGUGCUUAcuggcuGGCCcuGCGCaGACUc -3' miRNA: 3'- -CCACGCGUGGGUu-----UUGGu-CGCG-CUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 88651 | 0.66 | 0.942902 |
Target: 5'- --cGaCGCGCCCGGGgacucGCgCAGggcCGCGGCCa -3' miRNA: 3'- ccaC-GCGUGGGUUU-----UG-GUC---GCGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 95675 | 0.66 | 0.942902 |
Target: 5'- -cUGCGC-CCUGAcGGCgGGCGCGGgCa -3' miRNA: 3'- ccACGCGuGGGUU-UUGgUCGCGCUgG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 46201 | 0.66 | 0.942902 |
Target: 5'- gGGUG-GCGaCUAAGGCCccCGCGGCCc -3' miRNA: 3'- -CCACgCGUgGGUUUUGGucGCGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 49645 | 0.66 | 0.942902 |
Target: 5'- cGUGcCGgGCCCGGAGCUccGgGCGGCa -3' miRNA: 3'- cCAC-GCgUGGGUUUUGGu-CgCGCUGg -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 119292 | 0.66 | 0.942446 |
Target: 5'- cGG-GgGCGCCCGcAGACCcgcccaucgucggGGCGUccGACCc -3' miRNA: 3'- -CCaCgCGUGGGU-UUUGG-------------UCGCG--CUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 23553 | 0.66 | 0.940132 |
Target: 5'- cGGcgGCaGCcCCCGGGGcCCAGCcacacggcggcgcccGCGGCCg -3' miRNA: 3'- -CCa-CG-CGuGGGUUUU-GGUCG---------------CGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 92455 | 0.66 | 0.938238 |
Target: 5'- cGG-GCGCGagcgccaacgcgUCCGAGGCCgccaaGGCGCGggucGCCa -3' miRNA: 3'- -CCaCGCGU------------GGGUUUUGG-----UCGCGC----UGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 129745 | 0.66 | 0.938238 |
Target: 5'- --aGCGCGCCUu-GGCgGGgGCGAUa -3' miRNA: 3'- ccaCGCGUGGGuuUUGgUCgCGCUGg -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 38152 | 0.66 | 0.938238 |
Target: 5'- cGGUcGcCGgGCCCcga---GGCGCGACCa -3' miRNA: 3'- -CCA-C-GCgUGGGuuuuggUCGCGCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 48051 | 0.66 | 0.938238 |
Target: 5'- uGGUGCGCAgCgCGgcuacggagGAGCCAgGgGCG-CCg -3' miRNA: 3'- -CCACGCGUgG-GU---------UUUGGU-CgCGCuGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 104862 | 0.66 | 0.938238 |
Target: 5'- -cUGUGCuACCCG--GCC-GCGCGAUa -3' miRNA: 3'- ccACGCG-UGGGUuuUGGuCGCGCUGg -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 2973 | 0.66 | 0.937759 |
Target: 5'- -uUGCGC-CCCucccgcggcgcggGGAGgCGGCGgCGGCCg -3' miRNA: 3'- ccACGCGuGGG-------------UUUUgGUCGC-GCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 1874 | 0.66 | 0.937759 |
Target: 5'- cGUGCGCGgCCu---CCAcGCGCGcgaagacccccggGCCg -3' miRNA: 3'- cCACGCGUgGGuuuuGGU-CGCGC-------------UGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 20592 | 0.66 | 0.937759 |
Target: 5'- --cGCGCcccGCCCAuggcagauggcgcGGAUgGGCGgGGCCg -3' miRNA: 3'- ccaCGCG---UGGGU-------------UUUGgUCGCgCUGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 151181 | 0.66 | 0.933338 |
Target: 5'- cGGUGaCGCGCaggCGGAggGCgaGGCGCGGCg -3' miRNA: 3'- -CCAC-GCGUGg--GUUU--UGg-UCGCGCUGg -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 50834 | 0.66 | 0.933338 |
Target: 5'- cGUGCGUccuccgagcgACCCAGccCCuguacGCGCGcACCa -3' miRNA: 3'- cCACGCG----------UGGGUUuuGGu----CGCGC-UGG- -5' |
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5611 | 3' | -55.1 | NC_001806.1 | + | 87893 | 0.66 | 0.933338 |
Target: 5'- cGGc-CGUACCCGu--CCAGgGgGACCu -3' miRNA: 3'- -CCacGCGUGGGUuuuGGUCgCgCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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