miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 3' -55.1 NC_001806.1 + 1803 0.66 0.942902
Target:  5'- cGUGCGCACgCGGuagcgcacguuGCCGcCGCGGCa -3'
miRNA:   3'- cCACGCGUGgGUUu----------UGGUcGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 3913 0.66 0.942902
Target:  5'- --cGCgGCGCCCGAGAuCCGGaaGCaGGCCu -3'
miRNA:   3'- ccaCG-CGUGGGUUUU-GGUCg-CG-CUGG- -5'
5611 3' -55.1 NC_001806.1 + 84304 0.66 0.942902
Target:  5'- uGGUGCGUGCUUAcuggcuGGCCcuGCGCaGACUc -3'
miRNA:   3'- -CCACGCGUGGGUu-----UUGGu-CGCG-CUGG- -5'
5611 3' -55.1 NC_001806.1 + 88651 0.66 0.942902
Target:  5'- --cGaCGCGCCCGGGgacucGCgCAGggcCGCGGCCa -3'
miRNA:   3'- ccaC-GCGUGGGUUU-----UG-GUC---GCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 95675 0.66 0.942902
Target:  5'- -cUGCGC-CCUGAcGGCgGGCGCGGgCa -3'
miRNA:   3'- ccACGCGuGGGUU-UUGgUCGCGCUgG- -5'
5611 3' -55.1 NC_001806.1 + 46201 0.66 0.942902
Target:  5'- gGGUG-GCGaCUAAGGCCccCGCGGCCc -3'
miRNA:   3'- -CCACgCGUgGGUUUUGGucGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 49645 0.66 0.942902
Target:  5'- cGUGcCGgGCCCGGAGCUccGgGCGGCa -3'
miRNA:   3'- cCAC-GCgUGGGUUUUGGu-CgCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 119292 0.66 0.942446
Target:  5'- cGG-GgGCGCCCGcAGACCcgcccaucgucggGGCGUccGACCc -3'
miRNA:   3'- -CCaCgCGUGGGU-UUUGG-------------UCGCG--CUGG- -5'
5611 3' -55.1 NC_001806.1 + 23553 0.66 0.940132
Target:  5'- cGGcgGCaGCcCCCGGGGcCCAGCcacacggcggcgcccGCGGCCg -3'
miRNA:   3'- -CCa-CG-CGuGGGUUUU-GGUCG---------------CGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 92455 0.66 0.938238
Target:  5'- cGG-GCGCGagcgccaacgcgUCCGAGGCCgccaaGGCGCGggucGCCa -3'
miRNA:   3'- -CCaCGCGU------------GGGUUUUGG-----UCGCGC----UGG- -5'
5611 3' -55.1 NC_001806.1 + 129745 0.66 0.938238
Target:  5'- --aGCGCGCCUu-GGCgGGgGCGAUa -3'
miRNA:   3'- ccaCGCGUGGGuuUUGgUCgCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 38152 0.66 0.938238
Target:  5'- cGGUcGcCGgGCCCcga---GGCGCGACCa -3'
miRNA:   3'- -CCA-C-GCgUGGGuuuuggUCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 48051 0.66 0.938238
Target:  5'- uGGUGCGCAgCgCGgcuacggagGAGCCAgGgGCG-CCg -3'
miRNA:   3'- -CCACGCGUgG-GU---------UUUGGU-CgCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 104862 0.66 0.938238
Target:  5'- -cUGUGCuACCCG--GCC-GCGCGAUa -3'
miRNA:   3'- ccACGCG-UGGGUuuUGGuCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 2973 0.66 0.937759
Target:  5'- -uUGCGC-CCCucccgcggcgcggGGAGgCGGCGgCGGCCg -3'
miRNA:   3'- ccACGCGuGGG-------------UUUUgGUCGC-GCUGG- -5'
5611 3' -55.1 NC_001806.1 + 1874 0.66 0.937759
Target:  5'- cGUGCGCGgCCu---CCAcGCGCGcgaagacccccggGCCg -3'
miRNA:   3'- cCACGCGUgGGuuuuGGU-CGCGC-------------UGG- -5'
5611 3' -55.1 NC_001806.1 + 20592 0.66 0.937759
Target:  5'- --cGCGCcccGCCCAuggcagauggcgcGGAUgGGCGgGGCCg -3'
miRNA:   3'- ccaCGCG---UGGGU-------------UUUGgUCGCgCUGG- -5'
5611 3' -55.1 NC_001806.1 + 151181 0.66 0.933338
Target:  5'- cGGUGaCGCGCaggCGGAggGCgaGGCGCGGCg -3'
miRNA:   3'- -CCAC-GCGUGg--GUUU--UGg-UCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 50834 0.66 0.933338
Target:  5'- cGUGCGUccuccgagcgACCCAGccCCuguacGCGCGcACCa -3'
miRNA:   3'- cCACGCG----------UGGGUUuuGGu----CGCGC-UGG- -5'
5611 3' -55.1 NC_001806.1 + 87893 0.66 0.933338
Target:  5'- cGGc-CGUACCCGu--CCAGgGgGACCu -3'
miRNA:   3'- -CCacGCGUGGGUuuuGGUCgCgCUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.