miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5616 5' -53.5 NC_001806.1 + 38809 0.67 0.940501
Target:  5'- cCGCgGGGACCCgGgcgGGGGugGAUACg -3'
miRNA:   3'- -GUGgCUCUGGGgUaa-CCCUggUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 126881 0.67 0.940501
Target:  5'- gCGCCGGGGCUCUc--GGGGCCGc--- -3'
miRNA:   3'- -GUGGCUCUGGGGuaaCCCUGGUuaug -5'
5616 5' -53.5 NC_001806.1 + 78529 0.67 0.940501
Target:  5'- aCGCUGAG-CCCCucgggGGGGCgCGAgGCg -3'
miRNA:   3'- -GUGGCUCuGGGGuaa--CCCUG-GUUaUG- -5'
5616 5' -53.5 NC_001806.1 + 111220 0.67 0.940501
Target:  5'- gGCCGGGGCCUCGaugUGGGugGCgGcgGCg -3'
miRNA:   3'- gUGGCUCUGGGGUa--ACCC--UGgUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 2023 0.67 0.935615
Target:  5'- aCACCGcGGgCCCGUcgGcGGGCCAGUcGCa -3'
miRNA:   3'- -GUGGCuCUgGGGUAa-C-CCUGGUUA-UG- -5'
5616 5' -53.5 NC_001806.1 + 27833 0.67 0.935615
Target:  5'- gCGCCGGGuugguCCCCGgggacGGGGCCGc--- -3'
miRNA:   3'- -GUGGCUCu----GGGGUaa---CCCUGGUuaug -5'
5616 5' -53.5 NC_001806.1 + 99701 0.67 0.930481
Target:  5'- aCGCCG-GACCCUGggGaGGACCGuaggggGCg -3'
miRNA:   3'- -GUGGCuCUGGGGUaaC-CCUGGUua----UG- -5'
5616 5' -53.5 NC_001806.1 + 144978 0.68 0.925099
Target:  5'- -cCCGGGGCCCCGgcggacccaaGGGGCCccgGCc -3'
miRNA:   3'- guGGCUCUGGGGUaa--------CCCUGGuuaUG- -5'
5616 5' -53.5 NC_001806.1 + 79271 0.68 0.925099
Target:  5'- gGCgGAGGgCUCGUUGGGGCCc---- -3'
miRNA:   3'- gUGgCUCUgGGGUAACCCUGGuuaug -5'
5616 5' -53.5 NC_001806.1 + 28431 0.68 0.925099
Target:  5'- gACCGGGgucGCCCUGUUGGGggucGCCAu--- -3'
miRNA:   3'- gUGGCUC---UGGGGUAACCC----UGGUuaug -5'
5616 5' -53.5 NC_001806.1 + 147670 0.68 0.919468
Target:  5'- gGCCGGcuccGCCCCg--GGGGCCGggGCg -3'
miRNA:   3'- gUGGCUc---UGGGGuaaCCCUGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 15842 0.68 0.919468
Target:  5'- uCGCaCG-GGCCCCuuUUGGGGCCGcgGg -3'
miRNA:   3'- -GUG-GCuCUGGGGu-AACCCUGGUuaUg -5'
5616 5' -53.5 NC_001806.1 + 128039 0.68 0.919468
Target:  5'- gGCCGAcGAUgCCcgUGGcGGCCAcgGCc -3'
miRNA:   3'- gUGGCU-CUGgGGuaACC-CUGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 56260 0.68 0.913589
Target:  5'- aACCG-GGCCCCGUccccgGGGuCCuuccuGUGCa -3'
miRNA:   3'- gUGGCuCUGGGGUAa----CCCuGGu----UAUG- -5'
5616 5' -53.5 NC_001806.1 + 43744 0.68 0.913589
Target:  5'- gACCGAGGCgCCCuccUUGGGGCa----- -3'
miRNA:   3'- gUGGCUCUG-GGGu--AACCCUGguuaug -5'
5616 5' -53.5 NC_001806.1 + 11875 0.68 0.901094
Target:  5'- uCGCCGGGGCCagaCGc-GGGGCCGAagACg -3'
miRNA:   3'- -GUGGCUCUGGg--GUaaCCCUGGUUa-UG- -5'
5616 5' -53.5 NC_001806.1 + 78919 0.68 0.901094
Target:  5'- uCGCCGAGcgGCCCCucgcccGGGGCCcgccgugucuGGUGCu -3'
miRNA:   3'- -GUGGCUC--UGGGGuaa---CCCUGG----------UUAUG- -5'
5616 5' -53.5 NC_001806.1 + 91348 0.68 0.894482
Target:  5'- -cCCGGGACCCacgUGGcGGCCAAc-- -3'
miRNA:   3'- guGGCUCUGGGguaACC-CUGGUUaug -5'
5616 5' -53.5 NC_001806.1 + 128915 0.69 0.887631
Target:  5'- gGCCGGGcguCCCAUUGGGgacgACgAGUGCg -3'
miRNA:   3'- gUGGCUCug-GGGUAACCC----UGgUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 132640 0.69 0.880546
Target:  5'- gGCaCGGGACCUgGUgcgcGGGGCCGcgGCc -3'
miRNA:   3'- gUG-GCUCUGGGgUAa---CCCUGGUuaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.