miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5616 5' -53.5 NC_001806.1 + 49348 0.69 0.873232
Target:  5'- uCGCCGAGcgucccggcagcGCCCC---GGGcCCGAUGCg -3'
miRNA:   3'- -GUGGCUC------------UGGGGuaaCCCuGGUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 51694 0.66 0.961297
Target:  5'- -cCCGAgGACCCCGUgGGcGACUGcgACc -3'
miRNA:   3'- guGGCU-CUGGGGUAaCC-CUGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 54129 0.72 0.740651
Target:  5'- -cCCGGGGCCCa---GGGGCCGGUAg -3'
miRNA:   3'- guGGCUCUGGGguaaCCCUGGUUAUg -5'
5616 5' -53.5 NC_001806.1 + 55736 0.66 0.957612
Target:  5'- gACCcggGGGACCCCGaugugGGGGCCuc-GCu -3'
miRNA:   3'- gUGG---CUCUGGGGUaa---CCCUGGuuaUG- -5'
5616 5' -53.5 NC_001806.1 + 56260 0.68 0.913589
Target:  5'- aACCG-GGCCCCGUccccgGGGuCCuuccuGUGCa -3'
miRNA:   3'- gUGGCuCUGGGGUAa----CCCuGGu----UAUG- -5'
5616 5' -53.5 NC_001806.1 + 58158 0.8 0.321149
Target:  5'- cCGCCGAuACCgCGUUGGGACCGGUGg -3'
miRNA:   3'- -GUGGCUcUGGgGUAACCCUGGUUAUg -5'
5616 5' -53.5 NC_001806.1 + 59616 0.7 0.840962
Target:  5'- gCGCCGGGGCCU---UGGGGCCccggccgGGUACu -3'
miRNA:   3'- -GUGGCUCUGGGguaACCCUGG-------UUAUG- -5'
5616 5' -53.5 NC_001806.1 + 68582 0.66 0.961297
Target:  5'- gCACCGcggcGGCCC---UGGGGCCGGUccGCg -3'
miRNA:   3'- -GUGGCu---CUGGGguaACCCUGGUUA--UG- -5'
5616 5' -53.5 NC_001806.1 + 68725 0.66 0.967989
Target:  5'- gCGCCGG--UCCCGUUGGGGcagcCCAGcGCg -3'
miRNA:   3'- -GUGGCUcuGGGGUAACCCU----GGUUaUG- -5'
5616 5' -53.5 NC_001806.1 + 77536 0.67 0.949538
Target:  5'- -cCCGGGGCCCC--UGGuGcugcgcgaggccACCAGUACg -3'
miRNA:   3'- guGGCUCUGGGGuaACC-C------------UGGUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 78529 0.67 0.940501
Target:  5'- aCGCUGAG-CCCCucgggGGGGCgCGAgGCg -3'
miRNA:   3'- -GUGGCUCuGGGGuaa--CCCUG-GUUaUG- -5'
5616 5' -53.5 NC_001806.1 + 78919 0.68 0.901094
Target:  5'- uCGCCGAGcgGCCCCucgcccGGGGCCcgccgugucuGGUGCu -3'
miRNA:   3'- -GUGGCUC--UGGGGuaa---CCCUGG----------UUAUG- -5'
5616 5' -53.5 NC_001806.1 + 79271 0.68 0.925099
Target:  5'- gGCgGAGGgCUCGUUGGGGCCc---- -3'
miRNA:   3'- gUGgCUCUgGGGUAACCCUGGuuaug -5'
5616 5' -53.5 NC_001806.1 + 84423 0.66 0.961297
Target:  5'- -cCCGAGACgcagCCCGgggacgGGGGCCGGUu- -3'
miRNA:   3'- guGGCUCUG----GGGUaa----CCCUGGUUAug -5'
5616 5' -53.5 NC_001806.1 + 85409 0.74 0.596358
Target:  5'- uUACCcGGACCCCAcuuacgGGGGCCAcAUGCu -3'
miRNA:   3'- -GUGGcUCUGGGGUaa----CCCUGGU-UAUG- -5'
5616 5' -53.5 NC_001806.1 + 90077 0.67 0.945141
Target:  5'- uGCCGGGAuuacCUCCGUUcGcGGACCGAUugACa -3'
miRNA:   3'- gUGGCUCU----GGGGUAA-C-CCUGGUUA--UG- -5'
5616 5' -53.5 NC_001806.1 + 91348 0.68 0.894482
Target:  5'- -cCCGGGACCCacgUGGcGGCCAAc-- -3'
miRNA:   3'- guGGCUCUGGGguaACC-CUGGUUaug -5'
5616 5' -53.5 NC_001806.1 + 93590 0.66 0.957612
Target:  5'- gGCCcgGGGGCCCC---GGGACCG--GCa -3'
miRNA:   3'- gUGG--CUCUGGGGuaaCCCUGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 97419 0.66 0.957612
Target:  5'- uCACCGuGGCCUgGgacUGGGuGCCAAaGCg -3'
miRNA:   3'- -GUGGCuCUGGGgUa--ACCC-UGGUUaUG- -5'
5616 5' -53.5 NC_001806.1 + 99701 0.67 0.930481
Target:  5'- aCGCCG-GACCCUGggGaGGACCGuaggggGCg -3'
miRNA:   3'- -GUGGCuCUGGGGUaaC-CCUGGUua----UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.