miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5616 5' -53.5 NC_001806.1 + 2023 0.67 0.935615
Target:  5'- aCACCGcGGgCCCGUcgGcGGGCCAGUcGCa -3'
miRNA:   3'- -GUGGCuCUgGGGUAa-C-CCUGGUUA-UG- -5'
5616 5' -53.5 NC_001806.1 + 7357 0.7 0.816108
Target:  5'- gUACCGcguGACCCCA--GGGAuCCAcgACa -3'
miRNA:   3'- -GUGGCu--CUGGGGUaaCCCU-GGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 11875 0.68 0.901094
Target:  5'- uCGCCGGGGCCagaCGc-GGGGCCGAagACg -3'
miRNA:   3'- -GUGGCUCUGGg--GUaaCCCUGGUUa-UG- -5'
5616 5' -53.5 NC_001806.1 + 15842 0.68 0.919468
Target:  5'- uCGCaCG-GGCCCCuuUUGGGGCCGcgGg -3'
miRNA:   3'- -GUG-GCuCUGGGGu-AACCCUGGUuaUg -5'
5616 5' -53.5 NC_001806.1 + 20172 0.66 0.967989
Target:  5'- -cCCGGGcccGCCCCc--GGGGCCGGcGCg -3'
miRNA:   3'- guGGCUC---UGGGGuaaCCCUGGUUaUG- -5'
5616 5' -53.5 NC_001806.1 + 21033 0.66 0.961297
Target:  5'- cCAUCGAGAgUCCGUaGGuGACCuaccGUGCu -3'
miRNA:   3'- -GUGGCUCUgGGGUAaCC-CUGGu---UAUG- -5'
5616 5' -53.5 NC_001806.1 + 21506 0.7 0.824854
Target:  5'- gACCG-GGCCCCGgcccGGGGCCGcgAa -3'
miRNA:   3'- gUGGCuCUGGGGUaa--CCCUGGUuaUg -5'
5616 5' -53.5 NC_001806.1 + 21963 0.67 0.949538
Target:  5'- gGCCGGGcaGCCCCGgcGGGucgagcuggacGCCGAcGCg -3'
miRNA:   3'- gUGGCUC--UGGGGUaaCCC-----------UGGUUaUG- -5'
5616 5' -53.5 NC_001806.1 + 22064 0.73 0.700251
Target:  5'- gCGCCGGGcCCCCGcccccGGGGCgGGUGCu -3'
miRNA:   3'- -GUGGCUCuGGGGUaa---CCCUGgUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 27772 0.72 0.740651
Target:  5'- aCACCGGGuugggcCCCCAaaucgGGGGCCGggccGUGCa -3'
miRNA:   3'- -GUGGCUCu-----GGGGUaa---CCCUGGU----UAUG- -5'
5616 5' -53.5 NC_001806.1 + 27833 0.67 0.935615
Target:  5'- gCGCCGGGuugguCCCCGgggacGGGGCCGc--- -3'
miRNA:   3'- -GUGGCUCu----GGGGUaa---CCCUGGUuaug -5'
5616 5' -53.5 NC_001806.1 + 28431 0.68 0.925099
Target:  5'- gACCGGGgucGCCCUGUUGGGggucGCCAu--- -3'
miRNA:   3'- gUGGCUC---UGGGGUAACCC----UGGUuaug -5'
5616 5' -53.5 NC_001806.1 + 32964 0.76 0.494974
Target:  5'- gGCCGGGGCCCC-UUGGGuccGCCGggGCc -3'
miRNA:   3'- gUGGCUCUGGGGuAACCC---UGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 32996 0.69 0.880546
Target:  5'- gGCCG-GGCCgCCAcgGGGGCCGGc-- -3'
miRNA:   3'- gUGGCuCUGG-GGUaaCCCUGGUUaug -5'
5616 5' -53.5 NC_001806.1 + 37606 0.7 0.816108
Target:  5'- gCACCGGGGCCCa---GGGGCUAuucGCg -3'
miRNA:   3'- -GUGGCUCUGGGguaaCCCUGGUua-UG- -5'
5616 5' -53.5 NC_001806.1 + 38809 0.67 0.940501
Target:  5'- cCGCgGGGACCCgGgcgGGGGugGAUACg -3'
miRNA:   3'- -GUGgCUCUGGGgUaa-CCCUggUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 38870 0.66 0.957612
Target:  5'- aAUUGGGACCCaugggcgggguCGUUGGGAuCCAGgcUACa -3'
miRNA:   3'- gUGGCUCUGGG-----------GUAACCCU-GGUU--AUG- -5'
5616 5' -53.5 NC_001806.1 + 39568 0.69 0.873232
Target:  5'- gGCCGGGGCCaCCAUcuugugggcGGGACuCAcgACg -3'
miRNA:   3'- gUGGCUCUGG-GGUAa--------CCCUG-GUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 43481 0.66 0.956847
Target:  5'- -uUCGAGGCCCCcacgaucgacGGGGCCGugGCg -3'
miRNA:   3'- guGGCUCUGGGGuaa-------CCCUGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 43744 0.68 0.913589
Target:  5'- gACCGAGGCgCCCuccUUGGGGCa----- -3'
miRNA:   3'- gUGGCUCUG-GGGu--AACCCUGguuaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.