miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5616 5' -53.5 NC_001806.1 + 105620 1.1 0.003903
Target:  5'- cCACCGAGACCCCAUUGGGACCAAUACg -3'
miRNA:   3'- -GUGGCUCUGGGGUAACCCUGGUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 58158 0.8 0.321149
Target:  5'- cCGCCGAuACCgCGUUGGGACCGGUGg -3'
miRNA:   3'- -GUGGCUcUGGgGUAACCCUGGUUAUg -5'
5616 5' -53.5 NC_001806.1 + 150308 0.78 0.419834
Target:  5'- aUACCcGGaACCCCAg-GGGACCAAUGCg -3'
miRNA:   3'- -GUGGcUC-UGGGGUaaCCCUGGUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 32964 0.76 0.494974
Target:  5'- gGCCGGGGCCCC-UUGGGuccGCCGggGCc -3'
miRNA:   3'- gUGGCUCUGGGGuAACCC---UGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 85409 0.74 0.596358
Target:  5'- uUACCcGGACCCCAcuuacgGGGGCCAcAUGCu -3'
miRNA:   3'- -GUGGcUCUGGGGUaa----CCCUGGU-UAUG- -5'
5616 5' -53.5 NC_001806.1 + 122047 0.73 0.689978
Target:  5'- -cCCGGGGCCCC-UUGGGagaGCCA-UGCg -3'
miRNA:   3'- guGGCUCUGGGGuAACCC---UGGUuAUG- -5'
5616 5' -53.5 NC_001806.1 + 150103 0.73 0.689978
Target:  5'- cCACCGcggggcGGCCCCGUccccgGGGACCAAcccgGCg -3'
miRNA:   3'- -GUGGCu-----CUGGGGUAa----CCCUGGUUa---UG- -5'
5616 5' -53.5 NC_001806.1 + 22064 0.73 0.700251
Target:  5'- gCGCCGGGcCCCCGcccccGGGGCgGGUGCu -3'
miRNA:   3'- -GUGGCUCuGGGGUaa---CCCUGgUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 27772 0.72 0.740651
Target:  5'- aCACCGGGuugggcCCCCAaaucgGGGGCCGggccGUGCa -3'
miRNA:   3'- -GUGGCUCu-----GGGGUaa---CCCUGGU----UAUG- -5'
5616 5' -53.5 NC_001806.1 + 54129 0.72 0.740651
Target:  5'- -cCCGGGGCCCa---GGGGCCGGUAg -3'
miRNA:   3'- guGGCUCUGGGguaaCCCUGGUUAUg -5'
5616 5' -53.5 NC_001806.1 + 7357 0.7 0.816108
Target:  5'- gUACCGcguGACCCCA--GGGAuCCAcgACa -3'
miRNA:   3'- -GUGGCu--CUGGGGUaaCCCU-GGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 37606 0.7 0.816108
Target:  5'- gCACCGGGGCCCa---GGGGCUAuucGCg -3'
miRNA:   3'- -GUGGCUCUGGGguaaCCCUGGUua-UG- -5'
5616 5' -53.5 NC_001806.1 + 21506 0.7 0.824854
Target:  5'- gACCG-GGCCCCGgcccGGGGCCGcgAa -3'
miRNA:   3'- gUGGCuCUGGGGUaa--CCCUGGUuaUg -5'
5616 5' -53.5 NC_001806.1 + 59616 0.7 0.840962
Target:  5'- gCGCCGGGGCCU---UGGGGCCccggccgGGUACu -3'
miRNA:   3'- -GUGGCUCUGGGguaACCCUGG-------UUAUG- -5'
5616 5' -53.5 NC_001806.1 + 129861 0.69 0.857148
Target:  5'- uCACCccccucgGGGACgugaCCAcgUGGGGCCAAUACc -3'
miRNA:   3'- -GUGG-------CUCUGg---GGUa-ACCCUGGUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 49348 0.69 0.873232
Target:  5'- uCGCCGAGcgucccggcagcGCCCC---GGGcCCGAUGCg -3'
miRNA:   3'- -GUGGCUC------------UGGGGuaaCCCuGGUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 39568 0.69 0.873232
Target:  5'- gGCCGGGGCCaCCAUcuugugggcGGGACuCAcgACg -3'
miRNA:   3'- gUGGCUCUGG-GGUAa--------CCCUG-GUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 32996 0.69 0.880546
Target:  5'- gGCCG-GGCCgCCAcgGGGGCCGGc-- -3'
miRNA:   3'- gUGGCuCUGG-GGUaaCCCUGGUUaug -5'
5616 5' -53.5 NC_001806.1 + 132640 0.69 0.880546
Target:  5'- gGCaCGGGACCUgGUgcgcGGGGCCGcgGCc -3'
miRNA:   3'- gUG-GCUCUGGGgUAa---CCCUGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 128915 0.69 0.887631
Target:  5'- gGCCGGGcguCCCAUUGGGgacgACgAGUGCg -3'
miRNA:   3'- gUGGCUCug-GGGUAACCC----UGgUUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.