Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5616 | 5' | -53.5 | NC_001806.1 | + | 68725 | 0.66 | 0.967989 |
Target: 5'- gCGCCGG--UCCCGUUGGGGcagcCCAGcGCg -3' miRNA: 3'- -GUGGCUcuGGGGUAACCCU----GGUUaUG- -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 21506 | 0.7 | 0.824854 |
Target: 5'- gACCG-GGCCCCGgcccGGGGCCGcgAa -3' miRNA: 3'- gUGGCuCUGGGGUaa--CCCUGGUuaUg -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 59616 | 0.7 | 0.840962 |
Target: 5'- gCGCCGGGGCCU---UGGGGCCccggccgGGUACu -3' miRNA: 3'- -GUGGCUCUGGGguaACCCUGG-------UUAUG- -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 129861 | 0.69 | 0.857148 |
Target: 5'- uCACCccccucgGGGACgugaCCAcgUGGGGCCAAUACc -3' miRNA: 3'- -GUGG-------CUCUGg---GGUa-ACCCUGGUUAUG- -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 39568 | 0.69 | 0.873232 |
Target: 5'- gGCCGGGGCCaCCAUcuugugggcGGGACuCAcgACg -3' miRNA: 3'- gUGGCUCUGG-GGUAa--------CCCUG-GUuaUG- -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 49348 | 0.69 | 0.873232 |
Target: 5'- uCGCCGAGcgucccggcagcGCCCC---GGGcCCGAUGCg -3' miRNA: 3'- -GUGGCUC------------UGGGGuaaCCCuGGUUAUG- -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 32996 | 0.69 | 0.880546 |
Target: 5'- gGCCG-GGCCgCCAcgGGGGCCGGc-- -3' miRNA: 3'- gUGGCuCUGG-GGUaaCCCUGGUUaug -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 132640 | 0.69 | 0.880546 |
Target: 5'- gGCaCGGGACCUgGUgcgcGGGGCCGcgGCc -3' miRNA: 3'- gUG-GCUCUGGGgUAa---CCCUGGUuaUG- -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 128915 | 0.69 | 0.887631 |
Target: 5'- gGCCGGGcguCCCAUUGGGgacgACgAGUGCg -3' miRNA: 3'- gUGGCUCug-GGGUAACCC----UGgUUAUG- -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 7357 | 0.7 | 0.816108 |
Target: 5'- gUACCGcguGACCCCA--GGGAuCCAcgACa -3' miRNA: 3'- -GUGGCu--CUGGGGUaaCCCU-GGUuaUG- -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 37606 | 0.7 | 0.816108 |
Target: 5'- gCACCGGGGCCCa---GGGGCUAuucGCg -3' miRNA: 3'- -GUGGCUCUGGGguaaCCCUGGUua-UG- -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 54129 | 0.72 | 0.740651 |
Target: 5'- -cCCGGGGCCCa---GGGGCCGGUAg -3' miRNA: 3'- guGGCUCUGGGguaaCCCUGGUUAUg -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 58158 | 0.8 | 0.321149 |
Target: 5'- cCGCCGAuACCgCGUUGGGACCGGUGg -3' miRNA: 3'- -GUGGCUcUGGgGUAACCCUGGUUAUg -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 150308 | 0.78 | 0.419834 |
Target: 5'- aUACCcGGaACCCCAg-GGGACCAAUGCg -3' miRNA: 3'- -GUGGcUC-UGGGGUaaCCCUGGUUAUG- -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 32964 | 0.76 | 0.494974 |
Target: 5'- gGCCGGGGCCCC-UUGGGuccGCCGggGCc -3' miRNA: 3'- gUGGCUCUGGGGuAACCC---UGGUuaUG- -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 85409 | 0.74 | 0.596358 |
Target: 5'- uUACCcGGACCCCAcuuacgGGGGCCAcAUGCu -3' miRNA: 3'- -GUGGcUCUGGGGUaa----CCCUGGU-UAUG- -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 150103 | 0.73 | 0.689978 |
Target: 5'- cCACCGcggggcGGCCCCGUccccgGGGACCAAcccgGCg -3' miRNA: 3'- -GUGGCu-----CUGGGGUAa----CCCUGGUUa---UG- -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 122047 | 0.73 | 0.689978 |
Target: 5'- -cCCGGGGCCCC-UUGGGagaGCCA-UGCg -3' miRNA: 3'- guGGCUCUGGGGuAACCC---UGGUuAUG- -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 22064 | 0.73 | 0.700251 |
Target: 5'- gCGCCGGGcCCCCGcccccGGGGCgGGUGCu -3' miRNA: 3'- -GUGGCUCuGGGGUaa---CCCUGgUUAUG- -5' |
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5616 | 5' | -53.5 | NC_001806.1 | + | 27772 | 0.72 | 0.740651 |
Target: 5'- aCACCGGGuugggcCCCCAaaucgGGGGCCGggccGUGCa -3' miRNA: 3'- -GUGGCUCu-----GGGGUaa---CCCUGGU----UAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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