miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5616 5' -53.5 NC_001806.1 + 150308 0.78 0.419834
Target:  5'- aUACCcGGaACCCCAg-GGGACCAAUGCg -3'
miRNA:   3'- -GUGGcUC-UGGGGUaaCCCUGGUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 150103 0.73 0.689978
Target:  5'- cCACCGcggggcGGCCCCGUccccgGGGACCAAcccgGCg -3'
miRNA:   3'- -GUGGCu-----CUGGGGUAa----CCCUGGUUa---UG- -5'
5616 5' -53.5 NC_001806.1 + 147670 0.68 0.919468
Target:  5'- gGCCGGcuccGCCCCg--GGGGCCGggGCg -3'
miRNA:   3'- gUGGCUc---UGGGGuaaCCCUGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 146841 0.66 0.957612
Target:  5'- uGCgGcGGCUCCAgccgGGGACCGcgGCc -3'
miRNA:   3'- gUGgCuCUGGGGUaa--CCCUGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 144978 0.68 0.925099
Target:  5'- -cCCGGGGCCCCGgcggacccaaGGGGCCccgGCc -3'
miRNA:   3'- guGGCUCUGGGGUaa--------CCCUGGuuaUG- -5'
5616 5' -53.5 NC_001806.1 + 132640 0.69 0.880546
Target:  5'- gGCaCGGGACCUgGUgcgcGGGGCCGcgGCc -3'
miRNA:   3'- gUG-GCUCUGGGgUAa---CCCUGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 131375 0.67 0.940501
Target:  5'- cCACCGAGGCcuggCCCAUgaugcaGGGGgCGGUGa -3'
miRNA:   3'- -GUGGCUCUG----GGGUAa-----CCCUgGUUAUg -5'
5616 5' -53.5 NC_001806.1 + 129861 0.69 0.857148
Target:  5'- uCACCccccucgGGGACgugaCCAcgUGGGGCCAAUACc -3'
miRNA:   3'- -GUGG-------CUCUGg---GGUa-ACCCUGGUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 128915 0.69 0.887631
Target:  5'- gGCCGGGcguCCCAUUGGGgacgACgAGUGCg -3'
miRNA:   3'- gUGGCUCug-GGGUAACCC----UGgUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 128039 0.68 0.919468
Target:  5'- gGCCGAcGAUgCCcgUGGcGGCCAcgGCc -3'
miRNA:   3'- gUGGCU-CUGgGGuaACC-CUGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 126881 0.67 0.940501
Target:  5'- gCGCCGGGGCUCUc--GGGGCCGc--- -3'
miRNA:   3'- -GUGGCUCUGGGGuaaCCCUGGUuaug -5'
5616 5' -53.5 NC_001806.1 + 125980 0.66 0.964754
Target:  5'- cCGCUGGGGCCCCca-GGGuCCGu--- -3'
miRNA:   3'- -GUGGCUCUGGGGuaaCCCuGGUuaug -5'
5616 5' -53.5 NC_001806.1 + 122047 0.73 0.689978
Target:  5'- -cCCGGGGCCCC-UUGGGagaGCCA-UGCg -3'
miRNA:   3'- guGGCUCUGGGGuAACCC---UGGUuAUG- -5'
5616 5' -53.5 NC_001806.1 + 111220 0.67 0.940501
Target:  5'- gGCCGGGGCCUCGaugUGGGugGCgGcgGCg -3'
miRNA:   3'- gUGGCUCUGGGGUa--ACCC--UGgUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 106347 0.66 0.964754
Target:  5'- aCACCGcccccccGACCgCCgGUUGGGGCCcg-GCg -3'
miRNA:   3'- -GUGGCu------CUGG-GG-UAACCCUGGuuaUG- -5'
5616 5' -53.5 NC_001806.1 + 105620 1.1 0.003903
Target:  5'- cCACCGAGACCCCAUUGGGACCAAUACg -3'
miRNA:   3'- -GUGGCUCUGGGGUAACCCUGGUUAUG- -5'
5616 5' -53.5 NC_001806.1 + 105167 0.66 0.953693
Target:  5'- uGCCGAG-CCCCAgagcaacgcGGGcCCAcgACc -3'
miRNA:   3'- gUGGCUCuGGGGUaa-------CCCuGGUuaUG- -5'
5616 5' -53.5 NC_001806.1 + 102363 0.66 0.961297
Target:  5'- cCGCCGGGAgcaCCCCGUggugcaucagcgUGGcGAUCAcgauGUGCg -3'
miRNA:   3'- -GUGGCUCU---GGGGUA------------ACC-CUGGU----UAUG- -5'
5616 5' -53.5 NC_001806.1 + 99701 0.67 0.930481
Target:  5'- aCGCCG-GACCCUGggGaGGACCGuaggggGCg -3'
miRNA:   3'- -GUGGCuCUGGGGUaaC-CCUGGUua----UG- -5'
5616 5' -53.5 NC_001806.1 + 97419 0.66 0.957612
Target:  5'- uCACCGuGGCCUgGgacUGGGuGCCAAaGCg -3'
miRNA:   3'- -GUGGCuCUGGGgUa--ACCC-UGGUUaUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.