miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5621 3' -48.7 NC_001806.1 + 64438 0.66 0.999214
Target:  5'- cUCCCGGGUCCGgaUcCGCAg------- -3'
miRNA:   3'- -AGGGUCCAGGUgaA-GCGUauaauucc -5'
5621 3' -48.7 NC_001806.1 + 109687 0.66 0.999034
Target:  5'- aCCCGGG-CUGgUUCGCAgc--GAGGu -3'
miRNA:   3'- aGGGUCCaGGUgAAGCGUauaaUUCC- -5'
5621 3' -48.7 NC_001806.1 + 64036 0.66 0.999034
Target:  5'- cCCCAGGUUCA----GCAUGgcGGGGg -3'
miRNA:   3'- aGGGUCCAGGUgaagCGUAUaaUUCC- -5'
5621 3' -48.7 NC_001806.1 + 151260 0.66 0.998821
Target:  5'- cCCCGGGcCCACgccggGCGg--UGGGGg -3'
miRNA:   3'- aGGGUCCaGGUGaag--CGUauaAUUCC- -5'
5621 3' -48.7 NC_001806.1 + 28313 0.66 0.998821
Target:  5'- -gCCGGGcgCCAUguuggggCGCcAUGUUAGGGg -3'
miRNA:   3'- agGGUCCa-GGUGaa-----GCG-UAUAAUUCC- -5'
5621 3' -48.7 NC_001806.1 + 135420 0.67 0.998272
Target:  5'- cUCCAGGUCCugg--GCGUAcgAAGGg -3'
miRNA:   3'- aGGGUCCAGGugaagCGUAUaaUUCC- -5'
5621 3' -48.7 NC_001806.1 + 67401 0.67 0.996519
Target:  5'- gUCCAGGgCCugUUCgGUAUcgucGUUGGGGg -3'
miRNA:   3'- aGGGUCCaGGugAAG-CGUA----UAAUUCC- -5'
5621 3' -48.7 NC_001806.1 + 86010 0.69 0.990098
Target:  5'- cUCCCGGGggCGCUUgGCcgGggAGGGc -3'
miRNA:   3'- -AGGGUCCagGUGAAgCGuaUaaUUCC- -5'
5621 3' -48.7 NC_001806.1 + 33156 0.69 0.988693
Target:  5'- gUCCCGGG-CCGuacgcggcCUUCGCcccgUGAGGg -3'
miRNA:   3'- -AGGGUCCaGGU--------GAAGCGuauaAUUCC- -5'
5621 3' -48.7 NC_001806.1 + 63322 0.7 0.983539
Target:  5'- uUCCCAGGUugcagaccCCACUggaUCGCuug--GAGGc -3'
miRNA:   3'- -AGGGUCCA--------GGUGA---AGCGuauaaUUCC- -5'
5621 3' -48.7 NC_001806.1 + 115123 0.7 0.981476
Target:  5'- gCCCAGGUgCCGCggCGCGc---AGGGa -3'
miRNA:   3'- aGGGUCCA-GGUGaaGCGUauaaUUCC- -5'
5621 3' -48.7 NC_001806.1 + 130162 0.71 0.974125
Target:  5'- cUCCCAGGUCacaaaccuGCUgugUCGCcgGUUcAAGGg -3'
miRNA:   3'- -AGGGUCCAGg-------UGA---AGCGuaUAA-UUCC- -5'
5621 3' -48.7 NC_001806.1 + 19217 0.71 0.961303
Target:  5'- aCCCGGGcCCGCUU-GgGUcgUGGGGg -3'
miRNA:   3'- aGGGUCCaGGUGAAgCgUAuaAUUCC- -5'
5621 3' -48.7 NC_001806.1 + 44455 0.74 0.892006
Target:  5'- gCCCGGcGUCCGCguggaGCAUGcgGAGGg -3'
miRNA:   3'- aGGGUC-CAGGUGaag--CGUAUaaUUCC- -5'
5621 3' -48.7 NC_001806.1 + 66778 0.76 0.819455
Target:  5'- gUCCAGGUCCACgaaCGCAcAUgccggGAGGa -3'
miRNA:   3'- aGGGUCCAGGUGaa-GCGUaUAa----UUCC- -5'
5621 3' -48.7 NC_001806.1 + 62198 0.76 0.810348
Target:  5'- aUCgCCAGGUCCGCcgUCGCGcucUGguccgUAAGGg -3'
miRNA:   3'- -AG-GGUCCAGGUGa-AGCGU---AUa----AUUCC- -5'
5621 3' -48.7 NC_001806.1 + 104202 1.12 0.010037
Target:  5'- gUCCCAGGUCCACUUCGCAUAUUAAGGu -3'
miRNA:   3'- -AGGGUCCAGGUGAAGCGUAUAAUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.