miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5621 5' -56.3 NC_001806.1 + 46657 0.67 0.84204
Target:  5'- cGGCgUCGcgccccACCGAGCGACCUcgaGCc -3'
miRNA:   3'- -CCGgAGCuua---UGGCUCGCUGGGa--CGu -5'
5621 5' -56.3 NC_001806.1 + 50516 0.67 0.865357
Target:  5'- gGGCCgagcaCGAGgcGCUGGGCGACaCC-GCAg -3'
miRNA:   3'- -CCGGa----GCUUa-UGGCUCGCUG-GGaCGU- -5'
5621 5' -56.3 NC_001806.1 + 58068 0.66 0.879874
Target:  5'- aGGCC-CGGGagGCCGAGCu-CCCgGCu -3'
miRNA:   3'- -CCGGaGCUUa-UGGCUCGcuGGGaCGu -5'
5621 5' -56.3 NC_001806.1 + 59157 0.66 0.879874
Target:  5'- gGGUCUCGggUGCgGgacgcggagggGGCGuauGCCgCUGCGa -3'
miRNA:   3'- -CCGGAGCuuAUGgC-----------UCGC---UGG-GACGU- -5'
5621 5' -56.3 NC_001806.1 + 63123 0.66 0.900004
Target:  5'- aGCUUCaGGcagGCCGuguGCaGGCCCUGCAu -3'
miRNA:   3'- cCGGAG-CUua-UGGCu--CG-CUGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 68574 0.71 0.623415
Target:  5'- cGGCCUgCGc--ACCGcGGCGGCCCUGgGg -3'
miRNA:   3'- -CCGGA-GCuuaUGGC-UCGCUGGGACgU- -5'
5621 5' -56.3 NC_001806.1 + 69575 0.68 0.790522
Target:  5'- cGCCagCGAGcacacGCaCGGGCGGCUCUGCGa -3'
miRNA:   3'- cCGGa-GCUUa----UG-GCUCGCUGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 69659 0.67 0.84204
Target:  5'- gGGUC-CGGccGUGCCGAcggaacaucugGCGAgCCUGCGg -3'
miRNA:   3'- -CCGGaGCU--UAUGGCU-----------CGCUgGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 72375 0.66 0.893519
Target:  5'- gGGCC-CGGA-ACCc-GCGGCuCCUGCGg -3'
miRNA:   3'- -CCGGaGCUUaUGGcuCGCUG-GGACGU- -5'
5621 5' -56.3 NC_001806.1 + 72398 0.66 0.912283
Target:  5'- nGGaCUUGAcgGCC--GCGGCUCUGCAu -3'
miRNA:   3'- -CCgGAGCUuaUGGcuCGCUGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 73967 0.68 0.790522
Target:  5'- gGGCCccUCGGcguaAUGCCcgccccggccgGGGCGGCCCcGCAg -3'
miRNA:   3'- -CCGG--AGCU----UAUGG-----------CUCGCUGGGaCGU- -5'
5621 5' -56.3 NC_001806.1 + 74855 0.76 0.386766
Target:  5'- aGGCCUguccgGCCGuccuGGCGACCCUGCGg -3'
miRNA:   3'- -CCGGAgcuuaUGGC----UCGCUGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 75260 0.68 0.825541
Target:  5'- cGGCCcUGGGcgcgGCCGccAGCGACCCgGCc -3'
miRNA:   3'- -CCGGaGCUUa---UGGC--UCGCUGGGaCGu -5'
5621 5' -56.3 NC_001806.1 + 77116 0.66 0.893519
Target:  5'- cGCCaaGAGcGCCGAGCGGgCCgggGCc -3'
miRNA:   3'- cCGGagCUUaUGGCUCGCUgGGa--CGu -5'
5621 5' -56.3 NC_001806.1 + 77858 0.69 0.73394
Target:  5'- gGGCCUCGAuggAUGC--GGCGGCCgaGCu -3'
miRNA:   3'- -CCGGAGCU---UAUGgcUCGCUGGgaCGu -5'
5621 5' -56.3 NC_001806.1 + 79504 0.7 0.724151
Target:  5'- cGGCUcgCGAAgcacgACCGGGCGuCCCgGCc -3'
miRNA:   3'- -CCGGa-GCUUa----UGGCUCGCuGGGaCGu -5'
5621 5' -56.3 NC_001806.1 + 89497 0.66 0.886808
Target:  5'- gGGCCUuguuugucuggCGGAU-CCGGGCGGCgagCUGCu -3'
miRNA:   3'- -CCGGA-----------GCUUAuGGCUCGCUGg--GACGu -5'
5621 5' -56.3 NC_001806.1 + 90340 0.66 0.906259
Target:  5'- gGGgCUCGGggGUACCGcGGUGuCCCUGa- -3'
miRNA:   3'- -CCgGAGCU--UAUGGC-UCGCuGGGACgu -5'
5621 5' -56.3 NC_001806.1 + 90441 0.67 0.857784
Target:  5'- aGGCCcCGAAc-CUGAcGCGACUUUGCGa -3'
miRNA:   3'- -CCGGaGCUUauGGCU-CGCUGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 90971 0.67 0.865357
Target:  5'- cGGCCuUCGAAgccaGCCaGGGUaaGACCCcGCGg -3'
miRNA:   3'- -CCGG-AGCUUa---UGG-CUCG--CUGGGaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.