miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5621 5' -56.3 NC_001806.1 + 1424 0.75 0.438597
Target:  5'- aGGCCcagCGAAUcCCGGGCGGCgCCggcgGCAg -3'
miRNA:   3'- -CCGGa--GCUUAuGGCUCGCUG-GGa---CGU- -5'
5621 5' -56.3 NC_001806.1 + 2758 0.69 0.73394
Target:  5'- cGGCCaCGGG-GCgCGGGCGGgCCUGCGc -3'
miRNA:   3'- -CCGGaGCUUaUG-GCUCGCUgGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 4412 0.72 0.603087
Target:  5'- cGGCCUCGGAgagGggGGGUGGCCCggGCGg -3'
miRNA:   3'- -CCGGAGCUUa--UggCUCGCUGGGa-CGU- -5'
5621 5' -56.3 NC_001806.1 + 7028 0.68 0.790522
Target:  5'- cGGCCccagUUGG--GCCGGGCGACCCa--- -3'
miRNA:   3'- -CCGG----AGCUuaUGGCUCGCUGGGacgu -5'
5621 5' -56.3 NC_001806.1 + 8772 0.7 0.694351
Target:  5'- cGCCUU-AAUACCGAcuguugGCGGCCCaUGCGu -3'
miRNA:   3'- cCGGAGcUUAUGGCU------CGCUGGG-ACGU- -5'
5621 5' -56.3 NC_001806.1 + 9088 0.68 0.825541
Target:  5'- aGGCCggaagcccccCGGAgccACCGAGCGGCCagccagGCGa -3'
miRNA:   3'- -CCGGa---------GCUUa--UGGCUCGCUGGga----CGU- -5'
5621 5' -56.3 NC_001806.1 + 16148 0.66 0.906259
Target:  5'- cGGCgCUUagGAGcUGCCGGGaGACCgCUGCGa -3'
miRNA:   3'- -CCG-GAG--CUU-AUGGCUCgCUGG-GACGU- -5'
5621 5' -56.3 NC_001806.1 + 18955 0.66 0.879874
Target:  5'- uGGCaCUgCGugggGGUcCCGGGCGACCC-GCAg -3'
miRNA:   3'- -CCG-GA-GC----UUAuGGCUCGCUGGGaCGU- -5'
5621 5' -56.3 NC_001806.1 + 22169 0.73 0.513418
Target:  5'- aGGCCUCGGGcGCCccGGCGGCCgUGUg -3'
miRNA:   3'- -CCGGAGCUUaUGGc-UCGCUGGgACGu -5'
5621 5' -56.3 NC_001806.1 + 22802 0.69 0.753247
Target:  5'- uGGCCgUCGAGUGCCuGGCcGCCUgccGCGg -3'
miRNA:   3'- -CCGG-AGCUUAUGGcUCGcUGGGa--CGU- -5'
5621 5' -56.3 NC_001806.1 + 23704 0.67 0.857784
Target:  5'- uGGCCUCGAucGCCGcGCGgugcgccggGCCC-GCc -3'
miRNA:   3'- -CCGGAGCUuaUGGCuCGC---------UGGGaCGu -5'
5621 5' -56.3 NC_001806.1 + 23831 0.66 0.906259
Target:  5'- cGCCUCGGGcccgcugcGCCGcauGGCGGCCUggaUGCGc -3'
miRNA:   3'- cCGGAGCUUa-------UGGC---UCGCUGGG---ACGU- -5'
5621 5' -56.3 NC_001806.1 + 24546 0.69 0.742676
Target:  5'- cGGCCUCGGGgaccACCGAcgccaugGCG-CCCgGCGc -3'
miRNA:   3'- -CCGGAGCUUa---UGGCU-------CGCuGGGaCGU- -5'
5621 5' -56.3 NC_001806.1 + 24634 0.68 0.825541
Target:  5'- gGGCCUgGGcgcGCCGcuGCGGCCCgUGUAc -3'
miRNA:   3'- -CCGGAgCUua-UGGCu-CGCUGGG-ACGU- -5'
5621 5' -56.3 NC_001806.1 + 24837 0.73 0.56274
Target:  5'- gGGCCUCGGccacggGCCGcAGCGGCaCCgUGCu -3'
miRNA:   3'- -CCGGAGCUua----UGGC-UCGCUG-GG-ACGu -5'
5621 5' -56.3 NC_001806.1 + 28947 0.7 0.684303
Target:  5'- cGCCcCGGAUGuCUGGGUGuuuCCCUGCGa -3'
miRNA:   3'- cCGGaGCUUAU-GGCUCGCu--GGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 33529 0.67 0.865357
Target:  5'- cGGCCUaaUGGAUuuCCGGGCGcggugcCCCUGUc -3'
miRNA:   3'- -CCGGA--GCUUAu-GGCUCGCu-----GGGACGu -5'
5621 5' -56.3 NC_001806.1 + 37477 0.68 0.799509
Target:  5'- uGGCCUUGGcgGUCGAuGCGGCCCgaggauugccgGCAa -3'
miRNA:   3'- -CCGGAGCUuaUGGCU-CGCUGGGa----------CGU- -5'
5621 5' -56.3 NC_001806.1 + 38532 0.67 0.864609
Target:  5'- uGGCCUCuGGugguggcgcaccgGUAgCGAGCGACCggGCc -3'
miRNA:   3'- -CCGGAG-CU-------------UAUgGCUCGCUGGgaCGu -5'
5621 5' -56.3 NC_001806.1 + 41608 0.66 0.886808
Target:  5'- cGCCgCGAucGCCGGGgGugugggGCCCUGCu -3'
miRNA:   3'- cCGGaGCUuaUGGCUCgC------UGGGACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.