Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5621 | 5' | -56.3 | NC_001806.1 | + | 104238 | 1.11 | 0.002217 |
Target: 5'- uGGCCUCGAAUACCGAGCGACCCUGCAg -3' miRNA: 3'- -CCGGAGCUUAUGGCUCGCUGGGACGU- -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 74855 | 0.76 | 0.386766 |
Target: 5'- aGGCCUguccgGCCGuccuGGCGACCCUGCGg -3' miRNA: 3'- -CCGGAgcuuaUGGC----UCGCUGGGACGU- -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 1424 | 0.75 | 0.438597 |
Target: 5'- aGGCCcagCGAAUcCCGGGCGGCgCCggcgGCAg -3' miRNA: 3'- -CCGGa--GCUUAuGGCUCGCUG-GGa---CGU- -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 112250 | 0.74 | 0.456738 |
Target: 5'- uGGCCaccaGggUGgcCCGGGCGACCCUGg- -3' miRNA: 3'- -CCGGag--CuuAU--GGCUCGCUGGGACgu -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 22169 | 0.73 | 0.513418 |
Target: 5'- aGGCCUCGGGcGCCccGGCGGCCgUGUg -3' miRNA: 3'- -CCGGAGCUUaUGGc-UCGCUGGgACGu -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 127046 | 0.73 | 0.542827 |
Target: 5'- gGGCCUCucGUucuCCGGGgccCGGCCCUGCu -3' miRNA: 3'- -CCGGAGcuUAu--GGCUC---GCUGGGACGu -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 24837 | 0.73 | 0.56274 |
Target: 5'- gGGCCUCGGccacggGCCGcAGCGGCaCCgUGCu -3' miRNA: 3'- -CCGGAGCUua----UGGC-UCGCUG-GG-ACGu -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 4412 | 0.72 | 0.603087 |
Target: 5'- cGGCCUCGGAgagGggGGGUGGCCCggGCGg -3' miRNA: 3'- -CCGGAGCUUa--UggCUCGCUGGGa-CGU- -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 68574 | 0.71 | 0.623415 |
Target: 5'- cGGCCUgCGc--ACCGcGGCGGCCCUGgGg -3' miRNA: 3'- -CCGGA-GCuuaUGGC-UCGCUGGGACgU- -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 110272 | 0.71 | 0.643769 |
Target: 5'- aGGUCUCGAAUAcaacgacggcuuCCGuAGUaugGACCCUGCc -3' miRNA: 3'- -CCGGAGCUUAU------------GGC-UCG---CUGGGACGu -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 28947 | 0.7 | 0.684303 |
Target: 5'- cGCCcCGGAUGuCUGGGUGuuuCCCUGCGa -3' miRNA: 3'- cCGGaGCUUAU-GGCUCGCu--GGGACGU- -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 8772 | 0.7 | 0.694351 |
Target: 5'- cGCCUU-AAUACCGAcuguugGCGGCCCaUGCGu -3' miRNA: 3'- cCGGAGcUUAUGGCU------CGCUGGG-ACGU- -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 129670 | 0.7 | 0.724151 |
Target: 5'- cGCC-CGGGccGCCGAGCGGCCCg--- -3' miRNA: 3'- cCGGaGCUUa-UGGCUCGCUGGGacgu -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 79504 | 0.7 | 0.724151 |
Target: 5'- cGGCUcgCGAAgcacgACCGGGCGuCCCgGCc -3' miRNA: 3'- -CCGGa-GCUUa----UGGCUCGCuGGGaCGu -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 77858 | 0.69 | 0.73394 |
Target: 5'- gGGCCUCGAuggAUGC--GGCGGCCgaGCu -3' miRNA: 3'- -CCGGAGCU---UAUGgcUCGCUGGgaCGu -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 2758 | 0.69 | 0.73394 |
Target: 5'- cGGCCaCGGG-GCgCGGGCGGgCCUGCGc -3' miRNA: 3'- -CCGGaGCUUaUG-GCUCGCUgGGACGU- -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 24546 | 0.69 | 0.742676 |
Target: 5'- cGGCCUCGGGgaccACCGAcgccaugGCG-CCCgGCGc -3' miRNA: 3'- -CCGGAGCUUa---UGGCU-------CGCuGGGaCGU- -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 22802 | 0.69 | 0.753247 |
Target: 5'- uGGCCgUCGAGUGCCuGGCcGCCUgccGCGg -3' miRNA: 3'- -CCGG-AGCUUAUGGcUCGcUGGGa--CGU- -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 131973 | 0.69 | 0.772132 |
Target: 5'- cGGCCcUGGAgcgccagACCGGGCcgguGGCCCUGUu -3' miRNA: 3'- -CCGGaGCUUa------UGGCUCG----CUGGGACGu -5' |
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5621 | 5' | -56.3 | NC_001806.1 | + | 100774 | 0.69 | 0.781393 |
Target: 5'- cGGCCUCGGcgGCCagucgccGCGcCCCUcGCGa -3' miRNA: 3'- -CCGGAGCUuaUGGcu-----CGCuGGGA-CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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