miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5621 5' -56.3 NC_001806.1 + 72398 0.66 0.912283
Target:  5'- nGGaCUUGAcgGCC--GCGGCUCUGCAu -3'
miRNA:   3'- -CCgGAGCUuaUGGcuCGCUGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 129670 0.7 0.724151
Target:  5'- cGCC-CGGGccGCCGAGCGGCCCg--- -3'
miRNA:   3'- cCGGaGCUUa-UGGCUCGCUGGGacgu -5'
5621 5' -56.3 NC_001806.1 + 79504 0.7 0.724151
Target:  5'- cGGCUcgCGAAgcacgACCGGGCGuCCCgGCc -3'
miRNA:   3'- -CCGGa-GCUUa----UGGCUCGCuGGGaCGu -5'
5621 5' -56.3 NC_001806.1 + 77858 0.69 0.73394
Target:  5'- gGGCCUCGAuggAUGC--GGCGGCCgaGCu -3'
miRNA:   3'- -CCGGAGCU---UAUGgcUCGCUGGgaCGu -5'
5621 5' -56.3 NC_001806.1 + 2758 0.69 0.73394
Target:  5'- cGGCCaCGGG-GCgCGGGCGGgCCUGCGc -3'
miRNA:   3'- -CCGGaGCUUaUG-GCUCGCUgGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 24546 0.69 0.742676
Target:  5'- cGGCCUCGGGgaccACCGAcgccaugGCG-CCCgGCGc -3'
miRNA:   3'- -CCGGAGCUUa---UGGCU-------CGCuGGGaCGU- -5'
5621 5' -56.3 NC_001806.1 + 22802 0.69 0.753247
Target:  5'- uGGCCgUCGAGUGCCuGGCcGCCUgccGCGg -3'
miRNA:   3'- -CCGG-AGCUUAUGGcUCGcUGGGa--CGU- -5'
5621 5' -56.3 NC_001806.1 + 131973 0.69 0.772132
Target:  5'- cGGCCcUGGAgcgccagACCGGGCcgguGGCCCUGUu -3'
miRNA:   3'- -CCGGaGCUUa------UGGCUCG----CUGGGACGu -5'
5621 5' -56.3 NC_001806.1 + 100774 0.69 0.781393
Target:  5'- cGGCCUCGGcgGCCagucgccGCGcCCCUcGCGa -3'
miRNA:   3'- -CCGGAGCUuaUGGcu-----CGCuGGGA-CGU- -5'
5621 5' -56.3 NC_001806.1 + 8772 0.7 0.694351
Target:  5'- cGCCUU-AAUACCGAcuguugGCGGCCCaUGCGu -3'
miRNA:   3'- cCGGAGcUUAUGGCU------CGCUGGG-ACGU- -5'
5621 5' -56.3 NC_001806.1 + 28947 0.7 0.684303
Target:  5'- cGCCcCGGAUGuCUGGGUGuuuCCCUGCGa -3'
miRNA:   3'- cCGGaGCUUAU-GGCUCGCu--GGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 110272 0.71 0.643769
Target:  5'- aGGUCUCGAAUAcaacgacggcuuCCGuAGUaugGACCCUGCc -3'
miRNA:   3'- -CCGGAGCUUAU------------GGC-UCG---CUGGGACGu -5'
5621 5' -56.3 NC_001806.1 + 74855 0.76 0.386766
Target:  5'- aGGCCUguccgGCCGuccuGGCGACCCUGCGg -3'
miRNA:   3'- -CCGGAgcuuaUGGC----UCGCUGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 1424 0.75 0.438597
Target:  5'- aGGCCcagCGAAUcCCGGGCGGCgCCggcgGCAg -3'
miRNA:   3'- -CCGGa--GCUUAuGGCUCGCUG-GGa---CGU- -5'
5621 5' -56.3 NC_001806.1 + 112250 0.74 0.456738
Target:  5'- uGGCCaccaGggUGgcCCGGGCGACCCUGg- -3'
miRNA:   3'- -CCGGag--CuuAU--GGCUCGCUGGGACgu -5'
5621 5' -56.3 NC_001806.1 + 22169 0.73 0.513418
Target:  5'- aGGCCUCGGGcGCCccGGCGGCCgUGUg -3'
miRNA:   3'- -CCGGAGCUUaUGGc-UCGCUGGgACGu -5'
5621 5' -56.3 NC_001806.1 + 127046 0.73 0.542827
Target:  5'- gGGCCUCucGUucuCCGGGgccCGGCCCUGCu -3'
miRNA:   3'- -CCGGAGcuUAu--GGCUC---GCUGGGACGu -5'
5621 5' -56.3 NC_001806.1 + 24837 0.73 0.56274
Target:  5'- gGGCCUCGGccacggGCCGcAGCGGCaCCgUGCu -3'
miRNA:   3'- -CCGGAGCUua----UGGC-UCGCUG-GG-ACGu -5'
5621 5' -56.3 NC_001806.1 + 4412 0.72 0.603087
Target:  5'- cGGCCUCGGAgagGggGGGUGGCCCggGCGg -3'
miRNA:   3'- -CCGGAGCUUa--UggCUCGCUGGGa-CGU- -5'
5621 5' -56.3 NC_001806.1 + 68574 0.71 0.623415
Target:  5'- cGGCCUgCGc--ACCGcGGCGGCCCUGgGg -3'
miRNA:   3'- -CCGGA-GCuuaUGGC-UCGCUGGGACgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.