miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 5' -52.3 NC_001806.1 + 55530 0.77 0.568515
Target:  5'- cGGGGGGUUu-AGugGGGCGGC--CCg -3'
miRNA:   3'- cCCCUCCAAuuUCugCCCGCUGuaGG- -5'
5622 5' -52.3 NC_001806.1 + 14947 0.66 0.989366
Target:  5'- gGGGGAGGcagUGAGGaacgagaaaGCGGGguauguugaGGCGUCg -3'
miRNA:   3'- -CCCCUCCa--AUUUC---------UGCCCg--------CUGUAGg -5'
5622 5' -52.3 NC_001806.1 + 2992 0.75 0.6582
Target:  5'- cGGGGAGGcggc-GGCGgccgccagcgcgucGGCGGCGUCCg -3'
miRNA:   3'- -CCCCUCCaauuuCUGC--------------CCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 34786 0.76 0.640633
Target:  5'- cGGGGGGGggGGGGGgGGGCGGgAaaCCa -3'
miRNA:   3'- -CCCCUCCaaUUUCUgCCCGCUgUa-GG- -5'
5622 5' -52.3 NC_001806.1 + 27928 0.76 0.640633
Target:  5'- uGGGGAGGggAAAGGCGGGgGuAUAa-- -3'
miRNA:   3'- -CCCCUCCaaUUUCUGCCCgC-UGUagg -5'
5622 5' -52.3 NC_001806.1 + 12831 0.76 0.630287
Target:  5'- gGGGGAuGGU--AAGGCGucGCGGCGUCCu -3'
miRNA:   3'- -CCCCU-CCAauUUCUGCc-CGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 124103 0.76 0.619943
Target:  5'- cGGGGGGUcugGGGGAUacGGUGACGUCCa -3'
miRNA:   3'- cCCCUCCAa--UUUCUGc-CCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 31369 0.76 0.619943
Target:  5'- uGGGGAGGggGGGGuCGGGCgcuggGugGUCUc -3'
miRNA:   3'- -CCCCUCCaaUUUCuGCCCG-----CugUAGG- -5'
5622 5' -52.3 NC_001806.1 + 57583 0.76 0.609608
Target:  5'- cGGGAuGGUgcgAGAGuuGGGCGGCcgCCa -3'
miRNA:   3'- cCCCU-CCAa--UUUCugCCCGCUGuaGG- -5'
5622 5' -52.3 NC_001806.1 + 132784 0.77 0.599291
Target:  5'- cGGGAGGcggu-GGCGcGGUGGCAUCCc -3'
miRNA:   3'- cCCCUCCaauuuCUGC-CCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 34480 0.77 0.599291
Target:  5'- cGGGGGGGggGGAGACGGGgGGa---- -3'
miRNA:   3'- -CCCCUCCaaUUUCUGCCCgCUguagg -5'
5622 5' -52.3 NC_001806.1 + 103214 1.15 0.003027
Target:  5'- gGGGGAGGUUAAAGACGGGCGACAUCCa -3'
miRNA:   3'- -CCCCUCCAAUUUCUGCCCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 144618 0.78 0.53815
Target:  5'- cGGGGcGGccaAGGGGCGucGGCGACAUCCu -3'
miRNA:   3'- -CCCCuCCaa-UUUCUGC--CCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 86028 0.78 0.522181
Target:  5'- cGGGGAGGgcagggccgcgggGGGGGCGGGCu-CGUCCc -3'
miRNA:   3'- -CCCCUCCaa-----------UUUCUGCCCGcuGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 2860 0.78 0.498584
Target:  5'- cGGGGAGGg--GGGcGCGGGCGuccgagccggggGCGUCCg -3'
miRNA:   3'- -CCCCUCCaauUUC-UGCCCGC------------UGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 38098 0.79 0.488892
Target:  5'- cGGuGGGGGUUGGAGGCGGGCcACcuugCCc -3'
miRNA:   3'- -CC-CCUCCAAUUUCUGCCCGcUGua--GG- -5'
5622 5' -52.3 NC_001806.1 + 98846 0.79 0.46978
Target:  5'- cGGGGAGGgcGAGGA-GGGCGGCGa-- -3'
miRNA:   3'- -CCCCUCCaaUUUCUgCCCGCUGUagg -5'
5622 5' -52.3 NC_001806.1 + 81654 0.79 0.46978
Target:  5'- cGGGAGGgcuguGugGGGCGaagGCGUCCg -3'
miRNA:   3'- cCCCUCCaauuuCugCCCGC---UGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 20335 0.79 0.460368
Target:  5'- uGGGGGGGcgGcAAGGCGGGCGGCccuugggCCg -3'
miRNA:   3'- -CCCCUCCaaU-UUCUGCCCGCUGua-----GG- -5'
5622 5' -52.3 NC_001806.1 + 20727 0.81 0.388953
Target:  5'- cGGGGGGGcgGGGGGCcGGCGGCcUCCg -3'
miRNA:   3'- -CCCCUCCaaUUUCUGcCCGCUGuAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.