miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 5' -52.3 NC_001806.1 + 39 0.68 0.964373
Target:  5'- cGGGGGGUguguuuuGGGGgGGGCccguuuucGGCGUCUg -3'
miRNA:   3'- cCCCUCCAau-----UUCUgCCCG--------CUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 2596 0.68 0.967605
Target:  5'- aGGGGAcGGggAAcaGCGGGUGG--UCCg -3'
miRNA:   3'- -CCCCU-CCaaUUucUGCCCGCUguAGG- -5'
5622 5' -52.3 NC_001806.1 + 2642 0.69 0.949199
Target:  5'- cGGGGAGcagu-AGGCcuccaGGGCGGCggCCg -3'
miRNA:   3'- -CCCCUCcaauuUCUG-----CCCGCUGuaGG- -5'
5622 5' -52.3 NC_001806.1 + 2860 0.78 0.498584
Target:  5'- cGGGGAGGg--GGGcGCGGGCGuccgagccggggGCGUCCg -3'
miRNA:   3'- -CCCCUCCaauUUC-UGCCCGC------------UGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 2992 0.75 0.6582
Target:  5'- cGGGGAGGcggc-GGCGgccgccagcgcgucGGCGGCGUCCg -3'
miRNA:   3'- -CCCCUCCaauuuCUGC--------------CCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 3544 0.73 0.808102
Target:  5'- gGGGGAGGc---GGGCGcGGCgGACAgCCg -3'
miRNA:   3'- -CCCCUCCaauuUCUGC-CCG-CUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 4423 0.87 0.172477
Target:  5'- aGGGGGGGUggcccGGGCggGGGCGGCGUCCg -3'
miRNA:   3'- -CCCCUCCAauu--UCUG--CCCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 5662 0.72 0.816929
Target:  5'- uGGGcGGGGcgcGAGGGCGGGUGG-GUCCg -3'
miRNA:   3'- -CCC-CUCCaa-UUUCUGCCCGCUgUAGG- -5'
5622 5' -52.3 NC_001806.1 + 6078 0.66 0.987938
Target:  5'- cGGGGGcGGgcccgGgcGGCGGGgGGCGggucucUCCg -3'
miRNA:   3'- -CCCCU-CCaa---UuuCUGCCCgCUGU------AGG- -5'
5622 5' -52.3 NC_001806.1 + 6420 0.66 0.986033
Target:  5'- aGGGGGGGacgcgggggugGAGGAgGGGgGACGc-- -3'
miRNA:   3'- -CCCCUCCaa---------UUUCUgCCCgCUGUagg -5'
5622 5' -52.3 NC_001806.1 + 10389 0.73 0.78068
Target:  5'- cGGGGGGGcggggGGAGGCGGGagccggGGgGUCCc -3'
miRNA:   3'- -CCCCUCCaa---UUUCUGCCCg-----CUgUAGG- -5'
5622 5' -52.3 NC_001806.1 + 11304 0.75 0.70226
Target:  5'- aGGGGAGGcgUUGGGGugGGugucGUGGgGUCCa -3'
miRNA:   3'- -CCCCUCC--AAUUUCugCC----CGCUgUAGG- -5'
5622 5' -52.3 NC_001806.1 + 11397 0.66 0.989366
Target:  5'- aGGGAGGgcAuuGGCGuGcGUGACGaCCg -3'
miRNA:   3'- cCCCUCCaaUuuCUGC-C-CGCUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 11438 0.66 0.987482
Target:  5'- gGGGGGGGUgcucggaugcgauuUGagcucggcuccGAGGCGGGCcAUggCCg -3'
miRNA:   3'- -CCCCUCCA--------------AU-----------UUCUGCCCGcUGuaGG- -5'
5622 5' -52.3 NC_001806.1 + 11722 0.71 0.857549
Target:  5'- cGGGAGGUUGugguuuuGGAUcucccguggggaaGGGCGugGUCg -3'
miRNA:   3'- cCCCUCCAAUu------UCUG-------------CCCGCugUAGg -5'
5622 5' -52.3 NC_001806.1 + 12831 0.76 0.630287
Target:  5'- gGGGGAuGGU--AAGGCGucGCGGCGUCCu -3'
miRNA:   3'- -CCCCU-CCAauUUCUGCc-CGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 14947 0.66 0.989366
Target:  5'- gGGGGAGGcagUGAGGaacgagaaaGCGGGguauguugaGGCGUCg -3'
miRNA:   3'- -CCCCUCCa--AUUUC---------UGCCCg--------CUGUAGg -5'
5622 5' -52.3 NC_001806.1 + 15059 0.71 0.88072
Target:  5'- uGGGGGGUgucuu-CGGGCGACugGUCUc -3'
miRNA:   3'- cCCCUCCAauuucuGCCCGCUG--UAGG- -5'
5622 5' -52.3 NC_001806.1 + 15287 0.71 0.858328
Target:  5'- uGGGGGGUguguGGuCGGGCGugGUa- -3'
miRNA:   3'- cCCCUCCAauu-UCuGCCCGCugUAgg -5'
5622 5' -52.3 NC_001806.1 + 15709 0.67 0.970625
Target:  5'- cGGucGGGUguacGGCGGGCGAUuguUCCc -3'
miRNA:   3'- -CCccUCCAauuuCUGCCCGCUGu--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.