miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 5' -52.3 NC_001806.1 + 151749 0.68 0.964373
Target:  5'- cGGGGGGUguguuuuGGGGgGGGCccguuuucGGCGUCUg -3'
miRNA:   3'- cCCCUCCAau-----UUCUgCCCG--------CUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 151442 0.66 0.982755
Target:  5'- cGGcGGGGGgcGgcGGCgGGGCGGCcgCg -3'
miRNA:   3'- -CC-CCUCCaaUuuCUG-CCCGCUGuaGg -5'
5622 5' -52.3 NC_001806.1 + 151282 0.66 0.984641
Target:  5'- gGGGGccGGGgccgGGGGGC-GGCGGCGgugggCCg -3'
miRNA:   3'- -CCCC--UCCaa--UUUCUGcCCGCUGUa----GG- -5'
5622 5' -52.3 NC_001806.1 + 150090 0.7 0.901083
Target:  5'- aGGGGAGGc---AGGCccaccgcgGGGCGGCcccGUCCc -3'
miRNA:   3'- -CCCCUCCaauuUCUG--------CCCGCUG---UAGG- -5'
5622 5' -52.3 NC_001806.1 + 148690 0.69 0.930246
Target:  5'- cGGGaAGGUgucgagcgcAGGugGGGCGcgaucuCAUCCg -3'
miRNA:   3'- cCCC-UCCAau-------UUCugCCCGCu-----GUAGG- -5'
5622 5' -52.3 NC_001806.1 + 148192 0.68 0.964373
Target:  5'- cGGGGcguccGGcgGGGGGCGGGCGGuacguaGUCUg -3'
miRNA:   3'- -CCCCu----CCaaUUUCUGCCCGCUg-----UAGG- -5'
5622 5' -52.3 NC_001806.1 + 147782 0.73 0.761703
Target:  5'- cGGGGGGcccGGGGCGGGgGGCGgagCCu -3'
miRNA:   3'- cCCCUCCaauUUCUGCCCgCUGUa--GG- -5'
5622 5' -52.3 NC_001806.1 + 147480 0.68 0.964373
Target:  5'- cGGcGGAGGggAGcgGGGCggcgccggaggGGGCGGCG-CCg -3'
miRNA:   3'- -CC-CCUCCaaUU--UCUG-----------CCCGCUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 145546 0.68 0.967605
Target:  5'- uGGGGGGGggGAGuGCGGGgGAgGg-- -3'
miRNA:   3'- -CCCCUCCaaUUUcUGCCCgCUgUagg -5'
5622 5' -52.3 NC_001806.1 + 144618 0.78 0.53815
Target:  5'- cGGGGcGGccaAGGGGCGucGGCGACAUCCu -3'
miRNA:   3'- -CCCCuCCaa-UUUCUGC--CCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 144554 0.75 0.70226
Target:  5'- cGGGuGGUgcgAAAGAcuuucCGGGCG-CGUCCg -3'
miRNA:   3'- cCCCuCCAa--UUUCU-----GCCCGCuGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 144073 0.67 0.978467
Target:  5'- gGGGGAuGG--AAGGACGGGaagugGAaGUCCu -3'
miRNA:   3'- -CCCCU-CCaaUUUCUGCCCg----CUgUAGG- -5'
5622 5' -52.3 NC_001806.1 + 143814 0.71 0.88072
Target:  5'- aGGGAGGgggu-GACGGGgGACGg-- -3'
miRNA:   3'- cCCCUCCaauuuCUGCCCgCUGUagg -5'
5622 5' -52.3 NC_001806.1 + 143256 0.66 0.986366
Target:  5'- uGGGGGGGgauguGGGCGGGgGuGCGc-- -3'
miRNA:   3'- -CCCCUCCaauu-UCUGCCCgC-UGUagg -5'
5622 5' -52.3 NC_001806.1 + 143131 0.69 0.9249
Target:  5'- cGGGAGGggccgcGGAUGGGCGGg--CCu -3'
miRNA:   3'- cCCCUCCaauu--UCUGCCCGCUguaGG- -5'
5622 5' -52.3 NC_001806.1 + 142119 0.66 0.982755
Target:  5'- cGGGaguGGGGUcGucGGCGucugcuuuuuguGGCGGCGUCCc -3'
miRNA:   3'- -CCC---CUCCAaUuuCUGC------------CCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 140925 0.67 0.980699
Target:  5'- uGGGGAG---AAAGACGGcgcuGUGGCcUCCc -3'
miRNA:   3'- -CCCCUCcaaUUUCUGCC----CGCUGuAGG- -5'
5622 5' -52.3 NC_001806.1 + 140885 0.68 0.953338
Target:  5'- aGGGcccgucGGUacAGGGCGGGCcGuCAUCCg -3'
miRNA:   3'- cCCCu-----CCAauUUCUGCCCG-CuGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 135105 0.73 0.777866
Target:  5'- cGGGGAGGg---GGGCggGGGCagcgcugcgugcugGACGUCCg -3'
miRNA:   3'- -CCCCUCCaauuUCUG--CCCG--------------CUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 133704 0.68 0.967605
Target:  5'- -cGGAGGcggGGAGuCGGuCGGCGUCCc -3'
miRNA:   3'- ccCCUCCaa-UUUCuGCCcGCUGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.