miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 5' -52.3 NC_001806.1 + 132784 0.77 0.599291
Target:  5'- cGGGAGGcggu-GGCGcGGUGGCAUCCc -3'
miRNA:   3'- cCCCUCCaauuuCUGC-CCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 127405 0.71 0.866009
Target:  5'- aGGGGGGGggGGGGAC-GGUGAUAg-- -3'
miRNA:   3'- -CCCCUCCaaUUUCUGcCCGCUGUagg -5'
5622 5' -52.3 NC_001806.1 + 124103 0.76 0.619943
Target:  5'- cGGGGGGUcugGGGGAUacGGUGACGUCCa -3'
miRNA:   3'- cCCCUCCAa--UUUCUGc-CCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 120328 0.71 0.858328
Target:  5'- cGGGGcGGUcGGGGGCGGcGgGuCGUCCc -3'
miRNA:   3'- -CCCCuCCAaUUUCUGCC-CgCuGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 117067 0.71 0.858328
Target:  5'- cGGGGGGGU-----GgGGGUGgGCAUCCa -3'
miRNA:   3'- -CCCCUCCAauuucUgCCCGC-UGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 112053 0.72 0.834059
Target:  5'- gGGGGAGGcccuGGACGGGaCGgguaucggcgcGCAUCg -3'
miRNA:   3'- -CCCCUCCaauuUCUGCCC-GC-----------UGUAGg -5'
5622 5' -52.3 NC_001806.1 + 111347 0.67 0.976048
Target:  5'- gGGGGGGGUauauAAGGCcuGGGaucccACGUCCc -3'
miRNA:   3'- -CCCCUCCAau--UUCUG--CCCgc---UGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 109545 0.69 0.935348
Target:  5'- gGGGGAGGUgcgccuGGGCcaGGGCGAaCAc-- -3'
miRNA:   3'- -CCCCUCCAauu---UCUG--CCCGCU-GUagg -5'
5622 5' -52.3 NC_001806.1 + 105120 0.73 0.771255
Target:  5'- cGGGAGGaUUGGGGACagcuuucggGGGCGGCcgugCCg -3'
miRNA:   3'- cCCCUCC-AAUUUCUG---------CCCGCUGua--GG- -5'
5622 5' -52.3 NC_001806.1 + 103214 1.15 0.003027
Target:  5'- gGGGGAGGUUAAAGACGGGCGACAUCCa -3'
miRNA:   3'- -CCCCUCCAAUUUCUGCCCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 102884 0.67 0.981543
Target:  5'- cGGGGAGGUUGGugucguaucguagcGGCGGGuCGuugcGCAcgaucuggaccUCCa -3'
miRNA:   3'- -CCCCUCCAAUUu-------------CUGCCC-GC----UGU-----------AGG- -5'
5622 5' -52.3 NC_001806.1 + 99712 0.68 0.966338
Target:  5'- uGGGGAGGaccgUAGGGggcgcuguguggugGgGGGCGAUAcacggccUCCg -3'
miRNA:   3'- -CCCCUCCa---AUUUC--------------UgCCCGCUGU-------AGG- -5'
5622 5' -52.3 NC_001806.1 + 99639 0.66 0.986033
Target:  5'- uGGGGGcGGUggcgggccuGGCGGGCaGGCAgCUg -3'
miRNA:   3'- -CCCCU-CCAauuu-----CUGCCCG-CUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 99584 0.68 0.964373
Target:  5'- cGGGGGGGaacgcgGGcuccgucgguAGAgGGGCGcGCGUCUg -3'
miRNA:   3'- -CCCCUCCaa----UU----------UCUgCCCGC-UGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 98846 0.79 0.46978
Target:  5'- cGGGGAGGgcGAGGA-GGGCGGCGa-- -3'
miRNA:   3'- -CCCCUCCaaUUUCUgCCCGCUGUagg -5'
5622 5' -52.3 NC_001806.1 + 95440 0.71 0.858328
Target:  5'- gGGGGcAGGggcccgAGAcGugGGGgGACAUCg -3'
miRNA:   3'- -CCCC-UCCaa----UUU-CugCCCgCUGUAGg -5'
5622 5' -52.3 NC_001806.1 + 94538 0.67 0.980699
Target:  5'- uGGGGGcGG-UGGGGuCGGGCcuuauCGUCCc -3'
miRNA:   3'- -CCCCU-CCaAUUUCuGCCCGcu---GUAGG- -5'
5622 5' -52.3 NC_001806.1 + 89786 0.67 0.980699
Target:  5'- uGGGAGGggcuGGGGCGGacCGGCAcgCCc -3'
miRNA:   3'- cCCCUCCaau-UUCUGCCc-GCUGUa-GG- -5'
5622 5' -52.3 NC_001806.1 + 88937 0.71 0.873475
Target:  5'- cGGuGGGGUUGAAccccGCcgGGGCGugGUCCa -3'
miRNA:   3'- cCC-CUCCAAUUUc---UG--CCCGCugUAGG- -5'
5622 5' -52.3 NC_001806.1 + 86028 0.78 0.522181
Target:  5'- cGGGGAGGgcagggccgcgggGGGGGCGGGCu-CGUCCc -3'
miRNA:   3'- -CCCCUCCaa-----------UUUCUGCCCGcuGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.