miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 5' -52.3 NC_001806.1 + 19940 0.68 0.967605
Target:  5'- uGGGuGGGGU---GGGCGGGUcuucccccccGCGUCCg -3'
miRNA:   3'- -CCC-CUCCAauuUCUGCCCGc---------UGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 20335 0.79 0.460368
Target:  5'- uGGGGGGGcgGcAAGGCGGGCGGCccuugggCCg -3'
miRNA:   3'- -CCCCUCCaaU-UUCUGCCCGCUGua-----GG- -5'
5622 5' -52.3 NC_001806.1 + 20727 0.81 0.388953
Target:  5'- cGGGGGGGcgGGGGGCcGGCGGCcUCCg -3'
miRNA:   3'- -CCCCUCCaaUUUCUGcCCGCUGuAGG- -5'
5622 5' -52.3 NC_001806.1 + 21295 0.68 0.960204
Target:  5'- cGGGAGGgcccccgcGGCGGGCaccGACG-CCg -3'
miRNA:   3'- cCCCUCCaauuu---CUGCCCG---CUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 22082 0.67 0.972336
Target:  5'- cGGGGcGGGUgcuguacggcGGCcuGGGCGACAgCCg -3'
miRNA:   3'- -CCCC-UCCAauuu------CUG--CCCGCUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 22129 0.66 0.987787
Target:  5'- uGGGGGGcgcccGAGGCGGaggaggcGCGACG-CCg -3'
miRNA:   3'- cCCCUCCaau--UUCUGCC-------CGCUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 25102 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 25136 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 25170 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 25204 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 25238 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 25272 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 25306 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 25340 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 25374 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 27928 0.76 0.640633
Target:  5'- uGGGGAGGggAAAGGCGGGgGuAUAa-- -3'
miRNA:   3'- -CCCCUCCaaUUUCUGCCCgC-UGUagg -5'
5622 5' -52.3 NC_001806.1 + 28667 0.69 0.950883
Target:  5'- aGGGGGGUgggGAGGAgccgcccgccauauuUGGGgGACG-CCg -3'
miRNA:   3'- cCCCUCCAa--UUUCU---------------GCCCgCUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 28741 0.69 0.949199
Target:  5'- cGGGagaaGAGGgaaGAAGAgGGGuCGGgAUCCa -3'
miRNA:   3'- -CCC----CUCCaa-UUUCUgCCC-GCUgUAGG- -5'
5622 5' -52.3 NC_001806.1 + 29660 0.74 0.712373
Target:  5'- gGGGGAGGgagGAauAGGCGGGCgGGCGa-- -3'
miRNA:   3'- -CCCCUCCaa-UU--UCUGCCCG-CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 30009 0.69 0.949199
Target:  5'- uGGGGuugGGGUUGuugaagcgGAGGCgGGGCGGCcgaggggCCg -3'
miRNA:   3'- -CCCC---UCCAAU--------UUCUG-CCCGCUGua-----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.