Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5622 | 5' | -52.3 | NC_001806.1 | + | 19940 | 0.68 | 0.967605 |
Target: 5'- uGGGuGGGGU---GGGCGGGUcuucccccccGCGUCCg -3' miRNA: 3'- -CCC-CUCCAauuUCUGCCCGc---------UGUAGG- -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 20335 | 0.79 | 0.460368 |
Target: 5'- uGGGGGGGcgGcAAGGCGGGCGGCccuugggCCg -3' miRNA: 3'- -CCCCUCCaaU-UUCUGCCCGCUGua-----GG- -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 20727 | 0.81 | 0.388953 |
Target: 5'- cGGGGGGGcgGGGGGCcGGCGGCcUCCg -3' miRNA: 3'- -CCCCUCCaaUUUCUGcCCGCUGuAGG- -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 21295 | 0.68 | 0.960204 |
Target: 5'- cGGGAGGgcccccgcGGCGGGCaccGACG-CCg -3' miRNA: 3'- cCCCUCCaauuu---CUGCCCG---CUGUaGG- -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 22082 | 0.67 | 0.972336 |
Target: 5'- cGGGGcGGGUgcuguacggcGGCcuGGGCGACAgCCg -3' miRNA: 3'- -CCCC-UCCAauuu------CUG--CCCGCUGUaGG- -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 22129 | 0.66 | 0.987787 |
Target: 5'- uGGGGGGcgcccGAGGCGGaggaggcGCGACG-CCg -3' miRNA: 3'- cCCCUCCaau--UUCUGCC-------CGCUGUaGG- -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 25102 | 0.66 | 0.982755 |
Target: 5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3' miRNA: 3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 25136 | 0.66 | 0.982755 |
Target: 5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3' miRNA: 3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 25170 | 0.66 | 0.982755 |
Target: 5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3' miRNA: 3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 25204 | 0.66 | 0.982755 |
Target: 5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3' miRNA: 3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 25238 | 0.66 | 0.982755 |
Target: 5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3' miRNA: 3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 25272 | 0.66 | 0.982755 |
Target: 5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3' miRNA: 3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 25306 | 0.66 | 0.982755 |
Target: 5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3' miRNA: 3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 25340 | 0.66 | 0.982755 |
Target: 5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3' miRNA: 3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 25374 | 0.66 | 0.982755 |
Target: 5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3' miRNA: 3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 27928 | 0.76 | 0.640633 |
Target: 5'- uGGGGAGGggAAAGGCGGGgGuAUAa-- -3' miRNA: 3'- -CCCCUCCaaUUUCUGCCCgC-UGUagg -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 28667 | 0.69 | 0.950883 |
Target: 5'- aGGGGGGUgggGAGGAgccgcccgccauauuUGGGgGACG-CCg -3' miRNA: 3'- cCCCUCCAa--UUUCU---------------GCCCgCUGUaGG- -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 28741 | 0.69 | 0.949199 |
Target: 5'- cGGGagaaGAGGgaaGAAGAgGGGuCGGgAUCCa -3' miRNA: 3'- -CCC----CUCCaa-UUUCUgCCC-GCUgUAGG- -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 29660 | 0.74 | 0.712373 |
Target: 5'- gGGGGAGGgagGAauAGGCGGGCgGGCGa-- -3' miRNA: 3'- -CCCCUCCaa-UU--UCUGCCCG-CUGUagg -5' |
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5622 | 5' | -52.3 | NC_001806.1 | + | 30009 | 0.69 | 0.949199 |
Target: 5'- uGGGGuugGGGUUGuugaagcgGAGGCgGGGCGGCcgaggggCCg -3' miRNA: 3'- -CCCC---UCCAAU--------UUCUG-CCCGCUGua-----GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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