miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 5' -52.3 NC_001806.1 + 25340 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 65290 0.66 0.986366
Target:  5'- cGGGGAGG---AGGAgGGG-GGCccCCa -3'
miRNA:   3'- -CCCCUCCaauUUCUgCCCgCUGuaGG- -5'
5622 5' -52.3 NC_001806.1 + 49497 0.66 0.986366
Target:  5'- uGGGGcGGGUcgGcGGuucGCGGGUGGCG-CCg -3'
miRNA:   3'- -CCCC-UCCAa-UuUC---UGCCCGCUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 55692 0.66 0.982755
Target:  5'- uGGGGuuugGGGUcGAuGugGgGGUGACcUCCg -3'
miRNA:   3'- -CCCC----UCCAaUUuCugC-CCGCUGuAGG- -5'
5622 5' -52.3 NC_001806.1 + 25136 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 25306 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 25272 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 25102 0.66 0.982755
Target:  5'- cGGGAGGgggcgAGGGGCGGGagggGGCGa-- -3'
miRNA:   3'- cCCCUCCaa---UUUCUGCCCg---CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 15709 0.67 0.970625
Target:  5'- cGGucGGGUguacGGCGGGCGAUuguUCCc -3'
miRNA:   3'- -CCccUCCAauuuCUGCCCGCUGu--AGG- -5'
5622 5' -52.3 NC_001806.1 + 66555 0.67 0.976048
Target:  5'- cGGGGuuucGGUUuGGGGCcGGgGGCGUCa -3'
miRNA:   3'- -CCCCu---CCAAuUUCUGcCCgCUGUAGg -5'
5622 5' -52.3 NC_001806.1 + 34294 0.67 0.973436
Target:  5'- cGGGauGGGGUUuagcGGCGGGgGGCGgcgcgCCg -3'
miRNA:   3'- -CCC--CUCCAAuuu-CUGCCCgCUGUa----GG- -5'
5622 5' -52.3 NC_001806.1 + 85986 0.67 0.973436
Target:  5'- cGGGGGGUc---GGCaGGCGACGgcgucUCCc -3'
miRNA:   3'- cCCCUCCAauuuCUGcCCGCUGU-----AGG- -5'
5622 5' -52.3 NC_001806.1 + 22082 0.67 0.972336
Target:  5'- cGGGGcGGGUgcuguacggcGGCcuGGGCGACAgCCg -3'
miRNA:   3'- -CCCC-UCCAauuu------CUG--CCCGCUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 144073 0.67 0.978467
Target:  5'- gGGGGAuGG--AAGGACGGGaagugGAaGUCCu -3'
miRNA:   3'- -CCCCU-CCaaUUUCUGCCCg----CUgUAGG- -5'
5622 5' -52.3 NC_001806.1 + 49623 0.67 0.979828
Target:  5'- aGGuGGAGGUUcuggaggGAcgcgugccgggcccGGAgcucCGGGCGGCAUUCc -3'
miRNA:   3'- -CC-CCUCCAA-------UU--------------UCU----GCCCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 94538 0.67 0.980699
Target:  5'- uGGGGGcGG-UGGGGuCGGGCcuuauCGUCCc -3'
miRNA:   3'- -CCCCU-CCaAUUUCuGCCCGcu---GUAGG- -5'
5622 5' -52.3 NC_001806.1 + 89786 0.67 0.980699
Target:  5'- uGGGAGGggcuGGGGCGGacCGGCAcgCCc -3'
miRNA:   3'- cCCCUCCaau-UUCUGCCc-GCUGUa-GG- -5'
5622 5' -52.3 NC_001806.1 + 102884 0.67 0.981543
Target:  5'- cGGGGAGGUUGGugucguaucguagcGGCGGGuCGuugcGCAcgaucuggaccUCCa -3'
miRNA:   3'- -CCCCUCCAAUUu-------------CUGCCC-GC----UGU-----------AGG- -5'
5622 5' -52.3 NC_001806.1 + 111347 0.67 0.976048
Target:  5'- gGGGGGGGUauauAAGGCcuGGGaucccACGUCCc -3'
miRNA:   3'- -CCCCUCCAau--UUCUG--CCCgc---UGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 140925 0.67 0.980699
Target:  5'- uGGGGAG---AAAGACGGcgcuGUGGCcUCCc -3'
miRNA:   3'- -CCCCUCcaaUUUCUGCC----CGCUGuAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.