miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 5' -52.3 NC_001806.1 + 144554 0.75 0.70226
Target:  5'- cGGGuGGUgcgAAAGAcuuucCGGGCG-CGUCCg -3'
miRNA:   3'- cCCCuCCAa--UUUCU-----GCCCGCuGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 11304 0.75 0.70226
Target:  5'- aGGGGAGGcgUUGGGGugGGugucGUGGgGUCCa -3'
miRNA:   3'- -CCCCUCC--AAUUUCugCC----CGCUgUAGG- -5'
5622 5' -52.3 NC_001806.1 + 29660 0.74 0.712373
Target:  5'- gGGGGAGGgagGAauAGGCGGGCgGGCGa-- -3'
miRNA:   3'- -CCCCUCCaa-UU--UCUGCCCG-CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 147782 0.73 0.761703
Target:  5'- cGGGGGGcccGGGGCGGGgGGCGgagCCu -3'
miRNA:   3'- cCCCUCCaauUUCUGCCCgCUGUa--GG- -5'
5622 5' -52.3 NC_001806.1 + 33851 0.73 0.771255
Target:  5'- aGGGGGGUguAGGAUGGGUaucagGACuUCCa -3'
miRNA:   3'- cCCCUCCAauUUCUGCCCG-----CUGuAGG- -5'
5622 5' -52.3 NC_001806.1 + 105120 0.73 0.771255
Target:  5'- cGGGAGGaUUGGGGACagcuuucggGGGCGGCcgugCCg -3'
miRNA:   3'- cCCCUCC-AAUUUCUG---------CCCGCUGua--GG- -5'
5622 5' -52.3 NC_001806.1 + 135105 0.73 0.777866
Target:  5'- cGGGGAGGg---GGGCggGGGCagcgcugcgugcugGACGUCCg -3'
miRNA:   3'- -CCCCUCCaauuUCUG--CCCG--------------CUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 10389 0.73 0.78068
Target:  5'- cGGGGGGGcggggGGAGGCGGGagccggGGgGUCCc -3'
miRNA:   3'- -CCCCUCCaa---UUUCUGCCCg-----CUgUAGG- -5'
5622 5' -52.3 NC_001806.1 + 38256 0.73 0.78068
Target:  5'- cGGGGucuucuGGac-GAGACGGGCgGACcgCCg -3'
miRNA:   3'- -CCCCu-----CCaauUUCUGCCCG-CUGuaGG- -5'
5622 5' -52.3 NC_001806.1 + 3544 0.73 0.808102
Target:  5'- gGGGGAGGc---GGGCGcGGCgGACAgCCg -3'
miRNA:   3'- -CCCCUCCaauuUCUGC-CCG-CUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 5662 0.72 0.816929
Target:  5'- uGGGcGGGGcgcGAGGGCGGGUGG-GUCCg -3'
miRNA:   3'- -CCC-CUCCaa-UUUCUGCCCGCUgUAGG- -5'
5622 5' -52.3 NC_001806.1 + 55076 0.72 0.825584
Target:  5'- uGGGGcuggaGGGUcAGAGACGGGgGGCGg-- -3'
miRNA:   3'- -CCCC-----UCCAaUUUCUGCCCgCUGUagg -5'
5622 5' -52.3 NC_001806.1 + 49251 0.72 0.834059
Target:  5'- -uGGAGGagau-GGCGGGCGACGagCCg -3'
miRNA:   3'- ccCCUCCaauuuCUGCCCGCUGUa-GG- -5'
5622 5' -52.3 NC_001806.1 + 112053 0.72 0.834059
Target:  5'- gGGGGAGGcccuGGACGGGaCGgguaucggcgcGCAUCg -3'
miRNA:   3'- -CCCCUCCaauuUCUGCCC-GC-----------UGUAGg -5'
5622 5' -52.3 NC_001806.1 + 66217 0.72 0.850439
Target:  5'- cGGGGAaggGGUUGGGGGCGGaGCGuuGUg- -3'
miRNA:   3'- -CCCCU---CCAAUUUCUGCC-CGCugUAgg -5'
5622 5' -52.3 NC_001806.1 + 11722 0.71 0.857549
Target:  5'- cGGGAGGUUGugguuuuGGAUcucccguggggaaGGGCGugGUCg -3'
miRNA:   3'- cCCCUCCAAUu------UCUG-------------CCCGCugUAGg -5'
5622 5' -52.3 NC_001806.1 + 95440 0.71 0.858328
Target:  5'- gGGGGcAGGggcccgAGAcGugGGGgGACAUCg -3'
miRNA:   3'- -CCCC-UCCaa----UUU-CugCCCgCUGUAGg -5'
5622 5' -52.3 NC_001806.1 + 15287 0.71 0.858328
Target:  5'- uGGGGGGUguguGGuCGGGCGugGUa- -3'
miRNA:   3'- cCCCUCCAauu-UCuGCCCGCugUAgg -5'
5622 5' -52.3 NC_001806.1 + 117067 0.71 0.858328
Target:  5'- cGGGGGGGU-----GgGGGUGgGCAUCCa -3'
miRNA:   3'- -CCCCUCCAauuucUgCCCGC-UGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 120328 0.71 0.858328
Target:  5'- cGGGGcGGUcGGGGGCGGcGgGuCGUCCc -3'
miRNA:   3'- -CCCCuCCAaUUUCUGCC-CgCuGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.