miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 5' -52.3 NC_001806.1 + 127405 0.71 0.866009
Target:  5'- aGGGGGGGggGGGGAC-GGUGAUAg-- -3'
miRNA:   3'- -CCCCUCCaaUUUCUGcCCGCUGUagg -5'
5622 5' -52.3 NC_001806.1 + 67696 0.71 0.866009
Target:  5'- gGGGGAGG--GAGGGgGGGgGGgGUCg -3'
miRNA:   3'- -CCCCUCCaaUUUCUgCCCgCUgUAGg -5'
5622 5' -52.3 NC_001806.1 + 77950 0.71 0.866009
Target:  5'- uGGGGGGGU----GACGcGGCGGCc-CCg -3'
miRNA:   3'- -CCCCUCCAauuuCUGC-CCGCUGuaGG- -5'
5622 5' -52.3 NC_001806.1 + 88937 0.71 0.873475
Target:  5'- cGGuGGGGUUGAAccccGCcgGGGCGugGUCCa -3'
miRNA:   3'- cCC-CUCCAAUUUc---UG--CCCGCugUAGG- -5'
5622 5' -52.3 NC_001806.1 + 15059 0.71 0.88072
Target:  5'- uGGGGGGUgucuu-CGGGCGACugGUCUc -3'
miRNA:   3'- cCCCUCCAauuucuGCCCGCUG--UAGG- -5'
5622 5' -52.3 NC_001806.1 + 143814 0.71 0.88072
Target:  5'- aGGGAGGgggu-GACGGGgGACGg-- -3'
miRNA:   3'- cCCCUCCaauuuCUGCCCgCUGUagg -5'
5622 5' -52.3 NC_001806.1 + 72861 0.71 0.88072
Target:  5'- ---cGGGUccUGGAGAUGGGCGuCGUCCc -3'
miRNA:   3'- ccccUCCA--AUUUCUGCCCGCuGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 150090 0.7 0.901083
Target:  5'- aGGGGAGGc---AGGCccaccgcgGGGCGGCcccGUCCc -3'
miRNA:   3'- -CCCCUCCaauuUCUG--------CCCGCUG---UAGG- -5'
5622 5' -52.3 NC_001806.1 + 73138 0.7 0.907399
Target:  5'- cGGGcGAGGac---GACGGGCccacgguuccGGCGUCCu -3'
miRNA:   3'- -CCC-CUCCaauuuCUGCCCG----------CUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 32172 0.7 0.913476
Target:  5'- aGGGGGGGcggugcuucUUAGAGAccgcCGGGgGACGUg- -3'
miRNA:   3'- -CCCCUCC---------AAUUUCU----GCCCgCUGUAgg -5'
5622 5' -52.3 NC_001806.1 + 43979 0.69 0.923249
Target:  5'- uGGGAuGG--AGGGGCGGGUgugauagacccacaGGCAUCCa -3'
miRNA:   3'- cCCCU-CCaaUUUCUGCCCG--------------CUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 143131 0.69 0.9249
Target:  5'- cGGGAGGggccgcGGAUGGGCGGg--CCu -3'
miRNA:   3'- cCCCUCCaauu--UCUGCCCGCUguaGG- -5'
5622 5' -52.3 NC_001806.1 + 148690 0.69 0.930246
Target:  5'- cGGGaAGGUgucgagcgcAGGugGGGCGcgaucuCAUCCg -3'
miRNA:   3'- cCCC-UCCAau-------UUCugCCCGCu-----GUAGG- -5'
5622 5' -52.3 NC_001806.1 + 34519 0.69 0.930246
Target:  5'- cGGGGGGUgGGAGcGCGGGCcgGGCcgCUc -3'
miRNA:   3'- cCCCUCCAaUUUC-UGCCCG--CUGuaGG- -5'
5622 5' -52.3 NC_001806.1 + 109545 0.69 0.935348
Target:  5'- gGGGGAGGUgcgccuGGGCcaGGGCGAaCAc-- -3'
miRNA:   3'- -CCCCUCCAauu---UCUG--CCCGCU-GUagg -5'
5622 5' -52.3 NC_001806.1 + 83274 0.69 0.944822
Target:  5'- cGGaGGGGGUUc-GGGCGGGCGcggaggaccccGCAaCCc -3'
miRNA:   3'- -CC-CCUCCAAuuUCUGCCCGC-----------UGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 30641 0.69 0.948772
Target:  5'- cGGGGGGGcgcggccAGGGUGGGCccgggaccccccuGACGUCCu -3'
miRNA:   3'- -CCCCUCCaau----UUCUGCCCG-------------CUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 2642 0.69 0.949199
Target:  5'- cGGGGAGcagu-AGGCcuccaGGGCGGCggCCg -3'
miRNA:   3'- -CCCCUCcaauuUCUG-----CCCGCUGuaGG- -5'
5622 5' -52.3 NC_001806.1 + 28741 0.69 0.949199
Target:  5'- cGGGagaaGAGGgaaGAAGAgGGGuCGGgAUCCa -3'
miRNA:   3'- -CCC----CUCCaa-UUUCUgCCC-GCUgUAGG- -5'
5622 5' -52.3 NC_001806.1 + 31953 0.69 0.949199
Target:  5'- uGGGaGGGGUggcGGGGCGGGacggGGCGcCCa -3'
miRNA:   3'- -CCC-CUCCAau-UUCUGCCCg---CUGUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.