miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 5' -52.3 NC_001806.1 + 98846 0.79 0.46978
Target:  5'- cGGGGAGGgcGAGGA-GGGCGGCGa-- -3'
miRNA:   3'- -CCCCUCCaaUUUCUgCCCGCUGUagg -5'
5622 5' -52.3 NC_001806.1 + 81654 0.79 0.46978
Target:  5'- cGGGAGGgcuguGugGGGCGaagGCGUCCg -3'
miRNA:   3'- cCCCUCCaauuuCugCCCGC---UGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 20335 0.79 0.460368
Target:  5'- uGGGGGGGcgGcAAGGCGGGCGGCccuugggCCg -3'
miRNA:   3'- -CCCCUCCaaU-UUCUGCCCGCUGua-----GG- -5'
5622 5' -52.3 NC_001806.1 + 20727 0.81 0.388953
Target:  5'- cGGGGGGGcgGGGGGCcGGCGGCcUCCg -3'
miRNA:   3'- -CCCCUCCaaUUUCUGcCCGCUGuAGG- -5'
5622 5' -52.3 NC_001806.1 + 4423 0.87 0.172477
Target:  5'- aGGGGGGGUggcccGGGCggGGGCGGCGUCCg -3'
miRNA:   3'- -CCCCUCCAauu--UCUG--CCCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 31369 0.76 0.619943
Target:  5'- uGGGGAGGggGGGGuCGGGCgcuggGugGUCUc -3'
miRNA:   3'- -CCCCUCCaaUUUCuGCCCG-----CugUAGG- -5'
5622 5' -52.3 NC_001806.1 + 124103 0.76 0.619943
Target:  5'- cGGGGGGUcugGGGGAUacGGUGACGUCCa -3'
miRNA:   3'- cCCCUCCAa--UUUCUGc-CCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 38256 0.73 0.78068
Target:  5'- cGGGGucuucuGGac-GAGACGGGCgGACcgCCg -3'
miRNA:   3'- -CCCCu-----CCaauUUCUGCCCG-CUGuaGG- -5'
5622 5' -52.3 NC_001806.1 + 10389 0.73 0.78068
Target:  5'- cGGGGGGGcggggGGAGGCGGGagccggGGgGUCCc -3'
miRNA:   3'- -CCCCUCCaa---UUUCUGCCCg-----CUgUAGG- -5'
5622 5' -52.3 NC_001806.1 + 135105 0.73 0.777866
Target:  5'- cGGGGAGGg---GGGCggGGGCagcgcugcgugcugGACGUCCg -3'
miRNA:   3'- -CCCCUCCaauuUCUG--CCCG--------------CUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 105120 0.73 0.771255
Target:  5'- cGGGAGGaUUGGGGACagcuuucggGGGCGGCcgugCCg -3'
miRNA:   3'- cCCCUCC-AAUUUCUG---------CCCGCUGua--GG- -5'
5622 5' -52.3 NC_001806.1 + 33851 0.73 0.771255
Target:  5'- aGGGGGGUguAGGAUGGGUaucagGACuUCCa -3'
miRNA:   3'- cCCCUCCAauUUCUGCCCG-----CUGuAGG- -5'
5622 5' -52.3 NC_001806.1 + 147782 0.73 0.761703
Target:  5'- cGGGGGGcccGGGGCGGGgGGCGgagCCu -3'
miRNA:   3'- cCCCUCCaauUUCUGCCCgCUGUa--GG- -5'
5622 5' -52.3 NC_001806.1 + 29660 0.74 0.712373
Target:  5'- gGGGGAGGgagGAauAGGCGGGCgGGCGa-- -3'
miRNA:   3'- -CCCCUCCaa-UU--UCUGCCCG-CUGUagg -5'
5622 5' -52.3 NC_001806.1 + 144554 0.75 0.70226
Target:  5'- cGGGuGGUgcgAAAGAcuuucCGGGCG-CGUCCg -3'
miRNA:   3'- cCCCuCCAa--UUUCU-----GCCCGCuGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 11304 0.75 0.70226
Target:  5'- aGGGGAGGcgUUGGGGugGGugucGUGGgGUCCa -3'
miRNA:   3'- -CCCCUCC--AAUUUCugCC----CGCUgUAGG- -5'
5622 5' -52.3 NC_001806.1 + 2992 0.75 0.6582
Target:  5'- cGGGGAGGcggc-GGCGgccgccagcgcgucGGCGGCGUCCg -3'
miRNA:   3'- -CCCCUCCaauuuCUGC--------------CCGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 34786 0.76 0.640633
Target:  5'- cGGGGGGGggGGGGGgGGGCGGgAaaCCa -3'
miRNA:   3'- -CCCCUCCaaUUUCUgCCCGCUgUa-GG- -5'
5622 5' -52.3 NC_001806.1 + 27928 0.76 0.640633
Target:  5'- uGGGGAGGggAAAGGCGGGgGuAUAa-- -3'
miRNA:   3'- -CCCCUCCaaUUUCUGCCCgC-UGUagg -5'
5622 5' -52.3 NC_001806.1 + 12831 0.76 0.630287
Target:  5'- gGGGGAuGGU--AAGGCGucGCGGCGUCCu -3'
miRNA:   3'- -CCCCU-CCAauUUCUGCc-CGCUGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.