miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 5' -52.3 NC_001806.1 + 30641 0.69 0.948772
Target:  5'- cGGGGGGGcgcggccAGGGUGGGCccgggaccccccuGACGUCCu -3'
miRNA:   3'- -CCCCUCCaau----UUCUGCCCG-------------CUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 31010 0.66 0.989091
Target:  5'- gGGGGAcugccugcccauccuGGacaUGGAGACGGGgaacaucggggcguaCGugGUCCu -3'
miRNA:   3'- -CCCCU---------------CCa--AUUUCUGCCC---------------GCugUAGG- -5'
5622 5' -52.3 NC_001806.1 + 31369 0.76 0.619943
Target:  5'- uGGGGAGGggGGGGuCGGGCgcuggGugGUCUc -3'
miRNA:   3'- -CCCCUCCaaUUUCuGCCCG-----CugUAGG- -5'
5622 5' -52.3 NC_001806.1 + 31953 0.69 0.949199
Target:  5'- uGGGaGGGGUggcGGGGCGGGacggGGCGcCCa -3'
miRNA:   3'- -CCC-CUCCAau-UUCUGCCCg---CUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 32172 0.7 0.913476
Target:  5'- aGGGGGGGcggugcuucUUAGAGAccgcCGGGgGACGUg- -3'
miRNA:   3'- -CCCCUCC---------AAUUUCU----GCCCgCUGUAgg -5'
5622 5' -52.3 NC_001806.1 + 32864 0.66 0.987938
Target:  5'- aGGGGGGGggGAgaagcgagaacaGGAaaGGCGAUGgagCCc -3'
miRNA:   3'- -CCCCUCCaaUU------------UCUgcCCGCUGUa--GG- -5'
5622 5' -52.3 NC_001806.1 + 33654 0.68 0.957245
Target:  5'- gGGGGGGGUguc--GCGGGC--CGUCUg -3'
miRNA:   3'- -CCCCUCCAauuucUGCCCGcuGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 33851 0.73 0.771255
Target:  5'- aGGGGGGUguAGGAUGGGUaucagGACuUCCa -3'
miRNA:   3'- cCCCUCCAauUUCUGCCCG-----CUGuAGG- -5'
5622 5' -52.3 NC_001806.1 + 33986 0.66 0.984641
Target:  5'- gGGGGucgccGGGgcAGGGGCGGG-GGCGUg- -3'
miRNA:   3'- -CCCC-----UCCaaUUUCUGCCCgCUGUAgg -5'
5622 5' -52.3 NC_001806.1 + 34294 0.67 0.973436
Target:  5'- cGGGauGGGGUUuagcGGCGGGgGGCGgcgcgCCg -3'
miRNA:   3'- -CCC--CUCCAAuuu-CUGCCCgCUGUa----GG- -5'
5622 5' -52.3 NC_001806.1 + 34370 0.68 0.957245
Target:  5'- cGGGGcuggguaucccgAGGUggguGGGUGGGCGGCGguggCCg -3'
miRNA:   3'- -CCCC------------UCCAauu-UCUGCCCGCUGUa---GG- -5'
5622 5' -52.3 NC_001806.1 + 34480 0.77 0.599291
Target:  5'- cGGGGGGGggGGAGACGGGgGGa---- -3'
miRNA:   3'- -CCCCUCCaaUUUCUGCCCgCUguagg -5'
5622 5' -52.3 NC_001806.1 + 34519 0.69 0.930246
Target:  5'- cGGGGGGUgGGAGcGCGGGCcgGGCcgCUc -3'
miRNA:   3'- cCCCUCCAaUUUC-UGCCCG--CUGuaGG- -5'
5622 5' -52.3 NC_001806.1 + 34786 0.76 0.640633
Target:  5'- cGGGGGGGggGGGGGgGGGCGGgAaaCCa -3'
miRNA:   3'- -CCCCUCCaaUUUCUgCCCGCUgUa-GG- -5'
5622 5' -52.3 NC_001806.1 + 38098 0.79 0.488892
Target:  5'- cGGuGGGGGUUGGAGGCGGGCcACcuugCCc -3'
miRNA:   3'- -CC-CCUCCAAUUUCUGCCCGcUGua--GG- -5'
5622 5' -52.3 NC_001806.1 + 38256 0.73 0.78068
Target:  5'- cGGGGucuucuGGac-GAGACGGGCgGACcgCCg -3'
miRNA:   3'- -CCCCu-----CCaauUUCUGCCCG-CUGuaGG- -5'
5622 5' -52.3 NC_001806.1 + 43728 0.67 0.976048
Target:  5'- cGGGGGGGaUUGGGGugacCGaGGCGcCcUCCu -3'
miRNA:   3'- -CCCCUCC-AAUUUCu---GC-CCGCuGuAGG- -5'
5622 5' -52.3 NC_001806.1 + 43979 0.69 0.923249
Target:  5'- uGGGAuGG--AGGGGCGGGUgugauagacccacaGGCAUCCa -3'
miRNA:   3'- cCCCU-CCaaUUUCUGCCCG--------------CUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 49251 0.72 0.834059
Target:  5'- -uGGAGGagau-GGCGGGCGACGagCCg -3'
miRNA:   3'- ccCCUCCaauuuCUGCCCGCUGUa-GG- -5'
5622 5' -52.3 NC_001806.1 + 49497 0.66 0.986366
Target:  5'- uGGGGcGGGUcgGcGGuucGCGGGUGGCG-CCg -3'
miRNA:   3'- -CCCC-UCCAa-UuUC---UGCCCGCUGUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.