miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 5' -52.3 NC_001806.1 + 15709 0.67 0.970625
Target:  5'- cGGucGGGUguacGGCGGGCGAUuguUCCc -3'
miRNA:   3'- -CCccUCCAauuuCUGCCCGCUGu--AGG- -5'
5622 5' -52.3 NC_001806.1 + 133704 0.68 0.967605
Target:  5'- -cGGAGGcggGGAGuCGGuCGGCGUCCc -3'
miRNA:   3'- ccCCUCCaa-UUUCuGCCcGCUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 145546 0.68 0.967605
Target:  5'- uGGGGGGGggGAGuGCGGGgGAgGg-- -3'
miRNA:   3'- -CCCCUCCaaUUUcUGCCCgCUgUagg -5'
5622 5' -52.3 NC_001806.1 + 19940 0.68 0.967605
Target:  5'- uGGGuGGGGU---GGGCGGGUcuucccccccGCGUCCg -3'
miRNA:   3'- -CCC-CUCCAauuUCUGCCCGc---------UGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 2596 0.68 0.967605
Target:  5'- aGGGGAcGGggAAcaGCGGGUGG--UCCg -3'
miRNA:   3'- -CCCCU-CCaaUUucUGCCCGCUguAGG- -5'
5622 5' -52.3 NC_001806.1 + 99712 0.68 0.966338
Target:  5'- uGGGGAGGaccgUAGGGggcgcuguguggugGgGGGCGAUAcacggccUCCg -3'
miRNA:   3'- -CCCCUCCa---AUUUC--------------UgCCCGCUGU-------AGG- -5'
5622 5' -52.3 NC_001806.1 + 39 0.68 0.964373
Target:  5'- cGGGGGGUguguuuuGGGGgGGGCccguuuucGGCGUCUg -3'
miRNA:   3'- cCCCUCCAau-----UUCUgCCCG--------CUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 83805 0.68 0.964373
Target:  5'- cGGGGgcgaggagGGGgcGGGGuCGGcGCGGgAUCCg -3'
miRNA:   3'- -CCCC--------UCCaaUUUCuGCC-CGCUgUAGG- -5'
5622 5' -52.3 NC_001806.1 + 99584 0.68 0.964373
Target:  5'- cGGGGGGGaacgcgGGcuccgucgguAGAgGGGCGcGCGUCUg -3'
miRNA:   3'- -CCCCUCCaa----UU----------UCUgCCCGC-UGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 147480 0.68 0.964373
Target:  5'- cGGcGGAGGggAGcgGGGCggcgccggaggGGGCGGCG-CCg -3'
miRNA:   3'- -CC-CCUCCaaUU--UCUG-----------CCCGCUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 148192 0.68 0.964373
Target:  5'- cGGGGcguccGGcgGGGGGCGGGCGGuacguaGUCUg -3'
miRNA:   3'- -CCCCu----CCaaUUUCUGCCCGCUg-----UAGG- -5'
5622 5' -52.3 NC_001806.1 + 151749 0.68 0.964373
Target:  5'- cGGGGGGUguguuuuGGGGgGGGCccguuuucGGCGUCUg -3'
miRNA:   3'- cCCCUCCAau-----UUCUgCCCG--------CUGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 21295 0.68 0.960204
Target:  5'- cGGGAGGgcccccgcGGCGGGCaccGACG-CCg -3'
miRNA:   3'- cCCCUCCaauuu---CUGCCCG---CUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 34370 0.68 0.957245
Target:  5'- cGGGGcuggguaucccgAGGUggguGGGUGGGCGGCGguggCCg -3'
miRNA:   3'- -CCCC------------UCCAauu-UCUGCCCGCUGUa---GG- -5'
5622 5' -52.3 NC_001806.1 + 56677 0.68 0.957245
Target:  5'- uGGGGGGUcgggGGGGACGGG-GGC--CCg -3'
miRNA:   3'- cCCCUCCAa---UUUCUGCCCgCUGuaGG- -5'
5622 5' -52.3 NC_001806.1 + 72197 0.68 0.957245
Target:  5'- uGGGGcuGUUcAGGGACGG-CGACA-CCg -3'
miRNA:   3'- -CCCCucCAA-UUUCUGCCcGCUGUaGG- -5'
5622 5' -52.3 NC_001806.1 + 33654 0.68 0.957245
Target:  5'- gGGGGGGGUguc--GCGGGC--CGUCUg -3'
miRNA:   3'- -CCCCUCCAauuucUGCCCGcuGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 65723 0.68 0.957245
Target:  5'- cGGGaGAGGaUGcGGcUGGGCGGCuggCCa -3'
miRNA:   3'- -CCC-CUCCaAUuUCuGCCCGCUGua-GG- -5'
5622 5' -52.3 NC_001806.1 + 140885 0.68 0.953338
Target:  5'- aGGGcccgucGGUacAGGGCGGGCcGuCAUCCg -3'
miRNA:   3'- cCCCu-----CCAauUUCUGCCCG-CuGUAGG- -5'
5622 5' -52.3 NC_001806.1 + 28667 0.69 0.950883
Target:  5'- aGGGGGGUgggGAGGAgccgcccgccauauuUGGGgGACG-CCg -3'
miRNA:   3'- cCCCUCCAa--UUUCU---------------GCCCgCUGUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.