miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5623 5' -67.6 NC_001806.1 + 34562 0.67 0.368742
Target:  5'- cCCGGcCgCCGGGGaGCGUUgUCgCCGUCGg -3'
miRNA:   3'- -GGUCuG-GGCCCC-CGCGGgGG-GGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 135865 0.67 0.368742
Target:  5'- --cGGCCgGGGcgucuaucaGGUGCCCCCCggccuCGUCGa -3'
miRNA:   3'- gguCUGGgCCC---------CCGCGGGGGG-----GCAGC- -5'
5623 5' -67.6 NC_001806.1 + 150097 0.67 0.368742
Target:  5'- gCAGGCCCaccgcGGGGCgGCCCcguCCCCGg-- -3'
miRNA:   3'- gGUCUGGGc----CCCCG-CGGG---GGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 125194 0.68 0.364342
Target:  5'- aUCAGcguucACCCGGcGGCGCgcucaaccaccgcucCCCCCaCGUCGu -3'
miRNA:   3'- -GGUC-----UGGGCCcCCGCG---------------GGGGG-GCAGC- -5'
5623 5' -67.6 NC_001806.1 + 130074 0.68 0.361428
Target:  5'- aCGGcUCCGGGGcGCGCUCggagCCCGUCu -3'
miRNA:   3'- gGUCuGGGCCCC-CGCGGGg---GGGCAGc -5'
5623 5' -67.6 NC_001806.1 + 127547 0.68 0.361428
Target:  5'- gCGGGCUCGGGGuCGUaCCCCCCaaCGg -3'
miRNA:   3'- gGUCUGGGCCCCcGCG-GGGGGGcaGC- -5'
5623 5' -67.6 NC_001806.1 + 68935 0.68 0.360702
Target:  5'- aCCugacGACCCccgagcgGGGGGCuguggucccGCCgCCCCUGUUGg -3'
miRNA:   3'- -GGu---CUGGG-------CCCCCG---------CGG-GGGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 26706 0.68 0.359253
Target:  5'- -uGGGCCCgGGGGGCGgggcugaccccuccCaCCCCCCcUCGc -3'
miRNA:   3'- ggUCUGGG-CCCCCGC--------------G-GGGGGGcAGC- -5'
5623 5' -67.6 NC_001806.1 + 5588 0.68 0.354215
Target:  5'- gCCGGcACgCCGGGGGCccgugGCCgCggCCCGUUGg -3'
miRNA:   3'- -GGUC-UG-GGCCCCCG-----CGGgG--GGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 20473 0.68 0.354215
Target:  5'- uCgGGGCCCGGGcccCGCCCCcugCCCGUUc -3'
miRNA:   3'- -GgUCUGGGCCCcc-GCGGGG---GGGCAGc -5'
5623 5' -67.6 NC_001806.1 + 3374 0.68 0.354215
Target:  5'- gCCAGcCCCGGGacGGcCGCCagguCgCCGUCGa -3'
miRNA:   3'- -GGUCuGGGCCC--CC-GCGGg---GgGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 22926 0.68 0.347105
Target:  5'- -gGGACCCGcGGGCcccGCUUCCCCGcCGc -3'
miRNA:   3'- ggUCUGGGCcCCCG---CGGGGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 67352 0.68 0.347105
Target:  5'- -gGGAgCCGaucaGGGcCGCCCCCCCG-CGc -3'
miRNA:   3'- ggUCUgGGCc---CCC-GCGGGGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 2880 0.68 0.340097
Target:  5'- uCC-GAgCCGGGGGCGUCCgCgCCGcUCu -3'
miRNA:   3'- -GGuCUgGGCCCCCGCGGGgG-GGC-AGc -5'
5623 5' -67.6 NC_001806.1 + 3626 0.68 0.340097
Target:  5'- cCCGGugCggcggcggcgaCGGcGGCGaCCCCCUCGUCa -3'
miRNA:   3'- -GGUCugG-----------GCCcCCGC-GGGGGGGCAGc -5'
5623 5' -67.6 NC_001806.1 + 49447 0.68 0.340097
Target:  5'- gCAGGCCCGgcaGGGGgGauaCCUggguCCCGUCGa -3'
miRNA:   3'- gGUCUGGGC---CCCCgCg--GGG----GGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 121548 0.68 0.339402
Target:  5'- gCCAGgaucaccaaccACCCGGGGggcugcgaguccuGCGCCCCgCCGcCc -3'
miRNA:   3'- -GGUC-----------UGGGCCCC-------------CGCGGGGgGGCaGc -5'
5623 5' -67.6 NC_001806.1 + 97421 0.68 0.333192
Target:  5'- aCCGuGGCCUGGgacuGGGUGCCaaagCgCCCGUCGg -3'
miRNA:   3'- -GGU-CUGGGCC----CCCGCGGg---G-GGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 26423 0.68 0.333192
Target:  5'- cCCGGGCCCacGGGCGCCgUCCCa--- -3'
miRNA:   3'- -GGUCUGGGccCCCGCGGgGGGGcagc -5'
5623 5' -67.6 NC_001806.1 + 96530 0.68 0.326391
Target:  5'- uCCGGcgccGCCCGccccuGGCGCCCCCCCaaCGg -3'
miRNA:   3'- -GGUC----UGGGCcc---CCGCGGGGGGGcaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.