miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5623 5' -67.6 NC_001806.1 + 123955 0.67 0.406808
Target:  5'- gCAGAuCCCaGGcGGCGuuaaccgcacCCCCCUCGUCc -3'
miRNA:   3'- gGUCU-GGGcCC-CCGC----------GGGGGGGCAGc -5'
5623 5' -67.6 NC_001806.1 + 51097 0.67 0.406808
Target:  5'- -gAGACgaGGGGGcCGCCgCCCUG-CGg -3'
miRNA:   3'- ggUCUGggCCCCC-GCGGgGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 93888 0.67 0.406808
Target:  5'- gCGGGCCCGcGGGagGCCgCCCCGa-- -3'
miRNA:   3'- gGUCUGGGCcCCCg-CGGgGGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 140134 0.67 0.406808
Target:  5'- gCCAGGCgCGGcacacgggguGGGCGCCgcgccuccaCCCCCGa-- -3'
miRNA:   3'- -GGUCUGgGCC----------CCCGCGG---------GGGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 148797 0.67 0.398999
Target:  5'- gCCGGGgucuuCCUcgcgggGGGGGCuCCCCCCCGa-- -3'
miRNA:   3'- -GGUCU-----GGG------CCCCCGcGGGGGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 2947 0.67 0.398224
Target:  5'- gCCGGGCCgGGccGGgacucuugcgcuuGCGCCCCuCCCG-CGg -3'
miRNA:   3'- -GGUCUGGgCC--CC-------------CGCGGGG-GGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 136914 0.67 0.39436
Target:  5'- cCCAGccguCCuCGGGGGagcacagcgcuuccgUGUCCCCCCG-CGc -3'
miRNA:   3'- -GGUCu---GG-GCCCCC---------------GCGGGGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 119643 0.67 0.391287
Target:  5'- aCGGGCCCGGGGGCGaggaCaUCCUGa-- -3'
miRNA:   3'- gGUCUGGGCCCCCGCg---GgGGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 27835 0.67 0.391287
Target:  5'- gCCGGGuuggucCCCGGGgacGGgGCCgCCCCG-CGg -3'
miRNA:   3'- -GGUCU------GGGCCC---CCgCGGgGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 3469 0.67 0.391287
Target:  5'- gCCGG-CCUGGGcgcGGCGCCCggCgUCGUCGu -3'
miRNA:   3'- -GGUCuGGGCCC---CCGCGGG--GgGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 26185 0.67 0.391287
Target:  5'- gCCAGACgCCGaaaacGGGC-CCCCCCCa--- -3'
miRNA:   3'- -GGUCUG-GGCc----CCCGcGGGGGGGcagc -5'
5623 5' -67.6 NC_001806.1 + 6290 0.67 0.391287
Target:  5'- gCGGACgCGGGGGggaaagaccCGCCCaCCCCa--- -3'
miRNA:   3'- gGUCUGgGCCCCC---------GCGGG-GGGGcagc -5'
5623 5' -67.6 NC_001806.1 + 23944 0.67 0.383673
Target:  5'- gCgGGGCCUGGGGGgGCCgCCggagugguCCGcCGa -3'
miRNA:   3'- -GgUCUGGGCCCCCgCGGgGG--------GGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 38408 0.67 0.383673
Target:  5'- gCCGG-CUCGGGGGgGUCCUCguccagaucgCUGUCGg -3'
miRNA:   3'- -GGUCuGGGCCCCCgCGGGGG----------GGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 119585 0.67 0.383673
Target:  5'- gCGGugCUGGcGGGUcuggaGCCCCCCgG-CGg -3'
miRNA:   3'- gGUCugGGCC-CCCG-----CGGGGGGgCaGC- -5'
5623 5' -67.6 NC_001806.1 + 144809 0.67 0.383673
Target:  5'- --cGGCCCGGGacgaGGgGCCCCCgaCCG-CGg -3'
miRNA:   3'- gguCUGGGCCC----CCgCGGGGG--GGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 125549 0.67 0.382917
Target:  5'- cCCAGAcauuccgcuaucuCCUGGGGGCaCCCaCgCCCG-CGa -3'
miRNA:   3'- -GGUCU-------------GGGCCCCCGcGGG-G-GGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 30034 0.67 0.382917
Target:  5'- gCgGGGCggCCGaGGGGCcggacggGCCCCCuuGUCa -3'
miRNA:   3'- -GgUCUG--GGC-CCCCG-------CGGGGGggCAGc -5'
5623 5' -67.6 NC_001806.1 + 2690 0.67 0.375412
Target:  5'- gCUGGGcCCCGGGGGCuGCCgCCgCCagccgcccaggggGUCGg -3'
miRNA:   3'- -GGUCU-GGGCCCCCG-CGGgGG-GG-------------CAGC- -5'
5623 5' -67.6 NC_001806.1 + 34562 0.67 0.368742
Target:  5'- cCCGGcCgCCGGGGaGCGUUgUCgCCGUCGg -3'
miRNA:   3'- -GGUCuG-GGCCCC-CGCGGgGG-GGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.