miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5623 5' -67.6 NC_001806.1 + 30423 0.68 0.326391
Target:  5'- gCCGGGCgUGGaGGGUgggcacggGCCCUCCCG-CGg -3'
miRNA:   3'- -GGUCUGgGCC-CCCG--------CGGGGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 30728 0.66 0.430798
Target:  5'- cCCcGACCCccgcGGGGGcCGCCuCUUCCGcCGc -3'
miRNA:   3'- -GGuCUGGG----CCCCC-GCGG-GGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 32696 0.69 0.275701
Target:  5'- uUAGcCUCuGGGGCGCCCCCU-GUCGu -3'
miRNA:   3'- gGUCuGGGcCCCCGCGGGGGGgCAGC- -5'
5623 5' -67.6 NC_001806.1 + 33128 0.66 0.430798
Target:  5'- cCCGGACCgccgcgguCGGGGGC-CCCUcguCCCGggcCGu -3'
miRNA:   3'- -GGUCUGG--------GCCCCCGcGGGG---GGGCa--GC- -5'
5623 5' -67.6 NC_001806.1 + 34562 0.67 0.368742
Target:  5'- cCCGGcCgCCGGGGaGCGUUgUCgCCGUCGg -3'
miRNA:   3'- -GGUCuG-GGCCCC-CGCGGgGG-GGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 38408 0.67 0.383673
Target:  5'- gCCGG-CUCGGGGGgGUCCUCguccagaucgCUGUCGg -3'
miRNA:   3'- -GGUCuGGGCCCCCgCGGGGG----------GGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 44117 0.73 0.1501
Target:  5'- cCCGGucccgcgcucGCUCGGGGGgGCCUCCgCGUCa -3'
miRNA:   3'- -GGUC----------UGGGCCCCCgCGGGGGgGCAGc -5'
5623 5' -67.6 NC_001806.1 + 44842 0.66 0.430798
Target:  5'- gCAGGguCCCGGGGGCaaaUUCCCgCGUCc -3'
miRNA:   3'- gGUCU--GGGCCCCCGc--GGGGGgGCAGc -5'
5623 5' -67.6 NC_001806.1 + 46104 0.66 0.455598
Target:  5'- uCCGG-CCCGGggccugcgcGGGCGCCUCCgCCa--- -3'
miRNA:   3'- -GGUCuGGGCC---------CCCGCGGGGG-GGcagc -5'
5623 5' -67.6 NC_001806.1 + 46180 0.66 0.455598
Target:  5'- cCCGGGCCCcccgaacccagcGGGuGGCGaCUaaggCCCCCG-CGg -3'
miRNA:   3'- -GGUCUGGG------------CCC-CCGC-GG----GGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 48616 0.68 0.318365
Target:  5'- aCCGGACCCGcaucccccgucuGGGUuuucCCCUCCCGUCa -3'
miRNA:   3'- -GGUCUGGGCc-----------CCCGc---GGGGGGGCAGc -5'
5623 5' -67.6 NC_001806.1 + 49447 0.68 0.340097
Target:  5'- gCAGGCCCGgcaGGGGgGauaCCUggguCCCGUCGa -3'
miRNA:   3'- gGUCUGGGC---CCCCgCg--GGG----GGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 49648 0.71 0.211734
Target:  5'- gCCGGGCCCGGagcuccGGGCGgCaUUCCCGUUGg -3'
miRNA:   3'- -GGUCUGGGCC------CCCGCgG-GGGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 51097 0.67 0.406808
Target:  5'- -gAGACgaGGGGGcCGCCgCCCUG-CGg -3'
miRNA:   3'- ggUCUGggCCCCC-GCGGgGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 52540 0.67 0.368742
Target:  5'- gCCGGACgacgugguCCGcGGGGC-CUCCCCCGg-- -3'
miRNA:   3'- -GGUCUG--------GGC-CCCCGcGGGGGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 52581 0.67 0.4179
Target:  5'- gCCAGcgGCCCGGGGGgGCaUCgcgcggggggugggaCCUGUCGg -3'
miRNA:   3'- -GGUC--UGGGCCCCCgCGgGG---------------GGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 53257 0.7 0.269827
Target:  5'- cCCGGGCcgcaCCGGGccccCGCCCCCgCCGUUGa -3'
miRNA:   3'- -GGUCUG----GGCCCcc--GCGGGGG-GGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 55255 0.66 0.430798
Target:  5'- gUCGGcGCCCGGGccGGC-CCCCUCCGcCc -3'
miRNA:   3'- -GGUC-UGGGCCC--CCGcGGGGGGGCaGc -5'
5623 5' -67.6 NC_001806.1 + 56522 0.72 0.184812
Target:  5'- gCAGGCCCGGGcccGGCGUUCCCCgGg-- -3'
miRNA:   3'- gGUCUGGGCCC---CCGCGGGGGGgCagc -5'
5623 5' -67.6 NC_001806.1 + 57039 0.72 0.202404
Target:  5'- gCCGGGCCCGGGgccGGgGCCCCCggCUG-CGu -3'
miRNA:   3'- -GGUCUGGGCCC---CCgCGGGGG--GGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.