Results 41 - 60 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5623 | 5' | -67.6 | NC_001806.1 | + | 125549 | 0.67 | 0.382917 |
Target: 5'- cCCAGAcauuccgcuaucuCCUGGGGGCaCCCaCgCCCG-CGa -3' miRNA: 3'- -GGUCU-------------GGGCCCCCGcGGG-G-GGGCaGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 30034 | 0.67 | 0.382917 |
Target: 5'- gCgGGGCggCCGaGGGGCcggacggGCCCCCuuGUCa -3' miRNA: 3'- -GgUCUG--GGC-CCCCG-------CGGGGGggCAGc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 2690 | 0.67 | 0.375412 |
Target: 5'- gCUGGGcCCCGGGGGCuGCCgCCgCCagccgcccaggggGUCGg -3' miRNA: 3'- -GGUCU-GGGCCCCCG-CGGgGG-GG-------------CAGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 34562 | 0.67 | 0.368742 |
Target: 5'- cCCGGcCgCCGGGGaGCGUUgUCgCCGUCGg -3' miRNA: 3'- -GGUCuG-GGCCCC-CGCGGgGG-GGCAGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 135865 | 0.67 | 0.368742 |
Target: 5'- --cGGCCgGGGcgucuaucaGGUGCCCCCCggccuCGUCGa -3' miRNA: 3'- gguCUGGgCCC---------CCGCGGGGGG-----GCAGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 150097 | 0.67 | 0.368742 |
Target: 5'- gCAGGCCCaccgcGGGGCgGCCCcguCCCCGg-- -3' miRNA: 3'- gGUCUGGGc----CCCCG-CGGG---GGGGCagc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 52540 | 0.67 | 0.368742 |
Target: 5'- gCCGGACgacgugguCCGcGGGGC-CUCCCCCGg-- -3' miRNA: 3'- -GGUCUG--------GGC-CCCCGcGGGGGGGCagc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 148797 | 0.67 | 0.398999 |
Target: 5'- gCCGGGgucuuCCUcgcgggGGGGGCuCCCCCCCGa-- -3' miRNA: 3'- -GGUCU-----GGG------CCCCCGcGGGGGGGCagc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 22053 | 0.67 | 0.406808 |
Target: 5'- gCCGuGGCCCGGcgccGGGCccCCgCCCCCGgggCGg -3' miRNA: 3'- -GGU-CUGGGCC----CCCGc-GG-GGGGGCa--GC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 93888 | 0.67 | 0.406808 |
Target: 5'- gCGGGCCCGcGGGagGCCgCCCCGa-- -3' miRNA: 3'- gGUCUGGGCcCCCg-CGGgGGGGCagc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 140134 | 0.67 | 0.406808 |
Target: 5'- gCCAGGCgCGGcacacgggguGGGCGCCgcgccuccaCCCCCGa-- -3' miRNA: 3'- -GGUCUGgGCC----------CCCGCGG---------GGGGGCagc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 123955 | 0.67 | 0.406808 |
Target: 5'- gCAGAuCCCaGGcGGCGuuaaccgcacCCCCCUCGUCc -3' miRNA: 3'- gGUCU-GGGcCC-CCGC----------GGGGGGGCAGc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 136914 | 0.67 | 0.39436 |
Target: 5'- cCCAGccguCCuCGGGGGagcacagcgcuuccgUGUCCCCCCG-CGc -3' miRNA: 3'- -GGUCu---GG-GCCCCC---------------GCGGGGGGGCaGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 27835 | 0.67 | 0.391287 |
Target: 5'- gCCGGGuuggucCCCGGGgacGGgGCCgCCCCG-CGg -3' miRNA: 3'- -GGUCU------GGGCCC---CCgCGGgGGGGCaGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 6290 | 0.67 | 0.391287 |
Target: 5'- gCGGACgCGGGGGggaaagaccCGCCCaCCCCa--- -3' miRNA: 3'- gGUCUGgGCCCCC---------GCGGG-GGGGcagc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 3469 | 0.67 | 0.391287 |
Target: 5'- gCCGG-CCUGGGcgcGGCGCCCggCgUCGUCGu -3' miRNA: 3'- -GGUCuGGGCCC---CCGCGGG--GgGGCAGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 26185 | 0.67 | 0.391287 |
Target: 5'- gCCAGACgCCGaaaacGGGC-CCCCCCCa--- -3' miRNA: 3'- -GGUCUG-GGCc----CCCGcGGGGGGGcagc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 78525 | 0.67 | 0.414712 |
Target: 5'- gCAGACgCUgagccccucggGGGGGCGCgaggcgucaCCCCCCGcUCc -3' miRNA: 3'- gGUCUG-GG-----------CCCCCGCG---------GGGGGGC-AGc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 6083 | 0.67 | 0.414712 |
Target: 5'- gCGGGCCCGGGcGGCggggggcggGUCUCUCCGgCGc -3' miRNA: 3'- gGUCUGGGCCC-CCG---------CGGGGGGGCaGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 29522 | 0.67 | 0.406808 |
Target: 5'- aCCuGACCCuGGGGGgGCaCacggugagggCCCUGUCGc -3' miRNA: 3'- -GGuCUGGG-CCCCCgCG-Gg---------GGGGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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