miRNA display CGI


Results 21 - 40 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5623 5' -67.6 NC_001806.1 + 118824 0.66 0.455598
Target:  5'- uCCAGACUCGGGcucaugccaccGGCGaCUguaCCCCGUgGu -3'
miRNA:   3'- -GGUCUGGGCCC-----------CCGC-GGg--GGGGCAgC- -5'
5623 5' -67.6 NC_001806.1 + 24038 0.66 0.428362
Target:  5'- aCGGccGCCUGGGcgggcaauuggaccGGCGCCCCCgacgUGUCGg -3'
miRNA:   3'- gGUC--UGGGCCC--------------CCGCGGGGGg---GCAGC- -5'
5623 5' -67.6 NC_001806.1 + 5048 0.66 0.455598
Target:  5'- gCCccACCCGaGGGCcCCCCgCUCGUCGc -3'
miRNA:   3'- -GGucUGGGCcCCCGcGGGG-GGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 72634 0.66 0.430798
Target:  5'- uCCgAGAcauCCCGGGGGacgGCCggUCCGUCGg -3'
miRNA:   3'- -GG-UCU---GGGCCCCCg--CGGggGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 108714 0.66 0.430798
Target:  5'- aCGuGCUCGGGGGagaucaCCCCCCCGgggaCGg -3'
miRNA:   3'- gGUcUGGGCCCCCgc----GGGGGGGCa---GC- -5'
5623 5' -67.6 NC_001806.1 + 67432 0.66 0.430798
Target:  5'- gUCAGcGCCCcaGGGGGCGCgUCUgugCCGUCc -3'
miRNA:   3'- -GGUC-UGGG--CCCCCGCGgGGG---GGCAGc -5'
5623 5' -67.6 NC_001806.1 + 108357 0.66 0.447245
Target:  5'- uUCAGGcCCCGGuGGuGcCGCUCCCCCa--- -3'
miRNA:   3'- -GGUCU-GGGCC-CC-C-GCGGGGGGGcagc -5'
5623 5' -67.6 NC_001806.1 + 24796 0.66 0.464035
Target:  5'- --cGGCCCGGGGGCcCUgCCgCCGgCGc -3'
miRNA:   3'- gguCUGGGCCCCCGcGGgGG-GGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 79178 0.66 0.4203
Target:  5'- gCUAuuCCCGGGGcauccgguguaccaGCGCgCCCCCGaCGa -3'
miRNA:   3'- -GGUcuGGGCCCC--------------CGCGgGGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 137641 0.66 0.447245
Target:  5'- aCGGACCCuGGgguuggccgaGGGCGCCCugacgcgguuggCCCCGg-- -3'
miRNA:   3'- gGUCUGGG-CC----------CCCGCGGG------------GGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 30728 0.66 0.430798
Target:  5'- cCCcGACCCccgcGGGGGcCGCCuCUUCCGcCGc -3'
miRNA:   3'- -GGuCUGGG----CCCCC-GCGG-GGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 88805 0.66 0.464035
Target:  5'- gUCAGGCCCaGGaGCGUgugacggUCCCCGUCGg -3'
miRNA:   3'- -GGUCUGGGcCCcCGCGg------GGGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 28526 0.66 0.438156
Target:  5'- -aGGGCCCGGGGuCGCcgugggaCCCCCUGacUCa -3'
miRNA:   3'- ggUCUGGGCCCCcGCG-------GGGGGGC--AGc -5'
5623 5' -67.6 NC_001806.1 + 118892 0.66 0.430798
Target:  5'- gCGGAUgCGGuGGGggaGCUucuggCCCCCGUCGu -3'
miRNA:   3'- gGUCUGgGCC-CCCg--CGG-----GGGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 121850 0.66 0.430798
Target:  5'- aCCAG-CgCCGGGuGGCGCCUgUgUGUCu -3'
miRNA:   3'- -GGUCuG-GGCCC-CCGCGGGgGgGCAGc -5'
5623 5' -67.6 NC_001806.1 + 135865 0.67 0.368742
Target:  5'- --cGGCCgGGGcgucuaucaGGUGCCCCCCggccuCGUCGa -3'
miRNA:   3'- gguCUGGgCCC---------CCGCGGGGGG-----GCAGC- -5'
5623 5' -67.6 NC_001806.1 + 150097 0.67 0.368742
Target:  5'- gCAGGCCCaccgcGGGGCgGCCCcguCCCCGg-- -3'
miRNA:   3'- gGUCUGGGc----CCCCG-CGGG---GGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 2690 0.67 0.375412
Target:  5'- gCUGGGcCCCGGGGGCuGCCgCCgCCagccgcccaggggGUCGg -3'
miRNA:   3'- -GGUCU-GGGCCCCCG-CGGgGG-GG-------------CAGC- -5'
5623 5' -67.6 NC_001806.1 + 30034 0.67 0.382917
Target:  5'- gCgGGGCggCCGaGGGGCcggacggGCCCCCuuGUCa -3'
miRNA:   3'- -GgUCUG--GGC-CCCCG-------CGGGGGggCAGc -5'
5623 5' -67.6 NC_001806.1 + 23944 0.67 0.383673
Target:  5'- gCgGGGCCUGGGGGgGCCgCCggagugguCCGcCGa -3'
miRNA:   3'- -GgUCUGGGCCCCCgCGGgGG--------GGCaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.