miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5623 5' -67.6 NC_001806.1 + 29137 0.72 0.202404
Target:  5'- gCGGuCUCGGGGGgGagcCCCCCCCG-CGa -3'
miRNA:   3'- gGUCuGGGCCCCCgC---GGGGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 4944 0.72 0.202404
Target:  5'- gUCGGuGCCCGccgcGGGgGCCCUCCCGUCc -3'
miRNA:   3'- -GGUC-UGGGCc---CCCgCGGGGGGGCAGc -5'
5623 5' -67.6 NC_001806.1 + 72511 0.71 0.207023
Target:  5'- gCGGGCCUGGGGGaG-CCCUgCGUCGg -3'
miRNA:   3'- gGUCUGGGCCCCCgCgGGGGgGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 49648 0.71 0.211734
Target:  5'- gCCGGGCCCGGagcuccGGGCGgCaUUCCCGUUGg -3'
miRNA:   3'- -GGUCUGGGCC------CCCGCgG-GGGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 90565 0.71 0.211734
Target:  5'- cCUGGACCCGGaccGCGCCCUCCUGUa- -3'
miRNA:   3'- -GGUCUGGGCCcc-CGCGGGGGGGCAgc -5'
5623 5' -67.6 NC_001806.1 + 121097 0.71 0.216536
Target:  5'- cCCAGACCCcGGGcGCGCCCUCUUcugCGa -3'
miRNA:   3'- -GGUCUGGGcCCC-CGCGGGGGGGca-GC- -5'
5623 5' -67.6 NC_001806.1 + 103793 0.71 0.236685
Target:  5'- gCAGAccCCCGGGcGGCGCCgCCgCGgCGg -3'
miRNA:   3'- gGUCU--GGGCCC-CCGCGGgGGgGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 21796 0.71 0.236685
Target:  5'- gCCGGcagccCCCGGGcGGaCGCCgCCCCCGccCGg -3'
miRNA:   3'- -GGUCu----GGGCCC-CC-GCGG-GGGGGCa-GC- -5'
5623 5' -67.6 NC_001806.1 + 98143 0.7 0.241962
Target:  5'- --cGGCCCGGGGccugcuacaGcCGCCCCCUgGUCa -3'
miRNA:   3'- gguCUGGGCCCC---------C-GCGGGGGGgCAGc -5'
5623 5' -67.6 NC_001806.1 + 798 0.7 0.2567
Target:  5'- gUCAGAgauccaaacccUCCGGGGGCGCCCgcgcaccaccaccgCCCC-UCGc -3'
miRNA:   3'- -GGUCU-----------GGGCCCCCGCGGG--------------GGGGcAGC- -5'
5623 5' -67.6 NC_001806.1 + 53257 0.7 0.269827
Target:  5'- cCCGGGCcgcaCCGGGccccCGCCCCCgCCGUUGa -3'
miRNA:   3'- -GGUCUG----GGCCCcc--GCGGGGG-GGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 26828 0.7 0.269827
Target:  5'- gCGGGCggggaGGGGGCGCcggagCCCCCCG-CGa -3'
miRNA:   3'- gGUCUGgg---CCCCCGCG-----GGGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 121429 0.69 0.275701
Target:  5'- -uGGGCCCGGGGGCcuggugGCaCCUCCCcagCGg -3'
miRNA:   3'- ggUCUGGGCCCCCG------CG-GGGGGGca-GC- -5'
5623 5' -67.6 NC_001806.1 + 32696 0.69 0.275701
Target:  5'- uUAGcCUCuGGGGCGCCCCCU-GUCGu -3'
miRNA:   3'- gGUCuGGGcCCCCGCGGGGGGgCAGC- -5'
5623 5' -67.6 NC_001806.1 + 108049 0.69 0.287755
Target:  5'- gCCGGGCCgaCGGaGGGCGCCCCaagCGUg- -3'
miRNA:   3'- -GGUCUGG--GCC-CCCGCGGGGgg-GCAgc -5'
5623 5' -67.6 NC_001806.1 + 145246 0.69 0.287755
Target:  5'- -gGGACCCaaacgacaGGGGGCGCCCCagaggCUaagGUCGg -3'
miRNA:   3'- ggUCUGGG--------CCCCCGCGGGGg----GG---CAGC- -5'
5623 5' -67.6 NC_001806.1 + 127271 0.69 0.306607
Target:  5'- gCGGAccCCCGGaGGCGCCUgCCCCGcCa -3'
miRNA:   3'- gGUCU--GGGCCcCCGCGGG-GGGGCaGc -5'
5623 5' -67.6 NC_001806.1 + 97364 0.69 0.306607
Target:  5'- aCCaAGGCCCGGGccacGGCGCCgaCCaCCCGg-- -3'
miRNA:   3'- -GG-UCUGGGCCC----CCGCGG--GG-GGGCagc -5'
5623 5' -67.6 NC_001806.1 + 30282 0.69 0.313098
Target:  5'- cCCGGcCCCcGGGGCggagccggccGCCCgCCCCG-CGg -3'
miRNA:   3'- -GGUCuGGGcCCCCG----------CGGG-GGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 87405 0.69 0.313098
Target:  5'- gCCGGACgCuuGGGCGCCUCCCCccCGg -3'
miRNA:   3'- -GGUCUGgGccCCCGCGGGGGGGcaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.