miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5623 5' -67.6 NC_001806.1 + 4434 0.66 0.438978
Target:  5'- cCCGGGCggGGGcGGCGUCCgCCCGg-- -3'
miRNA:   3'- -GGUCUGggCCC-CCGCGGGgGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 28526 0.66 0.438156
Target:  5'- -aGGGCCCGGGGuCGCcgugggaCCCCCUGacUCa -3'
miRNA:   3'- ggUCUGGGCCCCcGCG-------GGGGGGC--AGc -5'
5623 5' -67.6 NC_001806.1 + 55255 0.66 0.430798
Target:  5'- gUCGGcGCCCGGGccGGC-CCCCUCCGcCc -3'
miRNA:   3'- -GGUC-UGGGCCC--CCGcGGGGGGGCaGc -5'
5623 5' -67.6 NC_001806.1 + 30728 0.66 0.430798
Target:  5'- cCCcGACCCccgcGGGGGcCGCCuCUUCCGcCGc -3'
miRNA:   3'- -GGuCUGGG----CCCCC-GCGG-GGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 108714 0.66 0.430798
Target:  5'- aCGuGCUCGGGGGagaucaCCCCCCCGgggaCGg -3'
miRNA:   3'- gGUcUGGGCCCCCgc----GGGGGGGCa---GC- -5'
5623 5' -67.6 NC_001806.1 + 121850 0.66 0.430798
Target:  5'- aCCAG-CgCCGGGuGGCGCCUgUgUGUCu -3'
miRNA:   3'- -GGUCuG-GGCCC-CCGCGGGgGgGCAGc -5'
5623 5' -67.6 NC_001806.1 + 72634 0.66 0.430798
Target:  5'- uCCgAGAcauCCCGGGGGacgGCCggUCCGUCGg -3'
miRNA:   3'- -GG-UCU---GGGCCCCCg--CGGggGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 33128 0.66 0.430798
Target:  5'- cCCGGACCgccgcgguCGGGGGC-CCCUcguCCCGggcCGu -3'
miRNA:   3'- -GGUCUGG--------GCCCCCGcGGGG---GGGCa--GC- -5'
5623 5' -67.6 NC_001806.1 + 67432 0.66 0.430798
Target:  5'- gUCAGcGCCCcaGGGGGCGCgUCUgugCCGUCc -3'
miRNA:   3'- -GGUC-UGGG--CCCCCGCGgGGG---GGCAGc -5'
5623 5' -67.6 NC_001806.1 + 118892 0.66 0.430798
Target:  5'- gCGGAUgCGGuGGGggaGCUucuggCCCCCGUCGu -3'
miRNA:   3'- gGUCUGgGCC-CCCg--CGG-----GGGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 44842 0.66 0.430798
Target:  5'- gCAGGguCCCGGGGGCaaaUUCCCgCGUCc -3'
miRNA:   3'- gGUCU--GGGCCCCCGc--GGGGGgGCAGc -5'
5623 5' -67.6 NC_001806.1 + 60592 0.66 0.429985
Target:  5'- cCCGGGacguuaCCGGGGGCcaccccgGCCCCaggUCGUCc -3'
miRNA:   3'- -GGUCUg-----GGCCCCCG-------CGGGGg--GGCAGc -5'
5623 5' -67.6 NC_001806.1 + 24038 0.66 0.428362
Target:  5'- aCGGccGCCUGGGcgggcaauuggaccGGCGCCCCCgacgUGUCGg -3'
miRNA:   3'- gGUC--UGGGCCC--------------CCGCGGGGGg---GCAGC- -5'
5623 5' -67.6 NC_001806.1 + 4341 0.66 0.422709
Target:  5'- gCGGGCCCGGcGGCGCUCgaugcggCCCG-CGg -3'
miRNA:   3'- gGUCUGGGCCcCCGCGGGg------GGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 79178 0.66 0.4203
Target:  5'- gCUAuuCCCGGGGcauccgguguaccaGCGCgCCCCCGaCGa -3'
miRNA:   3'- -GGUcuGGGCCCC--------------CGCGgGGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 52581 0.67 0.4179
Target:  5'- gCCAGcgGCCCGGGGGgGCaUCgcgcggggggugggaCCUGUCGg -3'
miRNA:   3'- -GGUC--UGGGCCCCCgCGgGG---------------GGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 78525 0.67 0.414712
Target:  5'- gCAGACgCUgagccccucggGGGGGCGCgaggcgucaCCCCCCGcUCc -3'
miRNA:   3'- gGUCUG-GG-----------CCCCCGCG---------GGGGGGC-AGc -5'
5623 5' -67.6 NC_001806.1 + 6083 0.67 0.414712
Target:  5'- gCGGGCCCGGGcGGCggggggcggGUCUCUCCGgCGc -3'
miRNA:   3'- gGUCUGGGCCC-CCG---------CGGGGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 51097 0.67 0.406808
Target:  5'- -gAGACgaGGGGGcCGCCgCCCUG-CGg -3'
miRNA:   3'- ggUCUGggCCCCC-GCGGgGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 22053 0.67 0.406808
Target:  5'- gCCGuGGCCCGGcgccGGGCccCCgCCCCCGgggCGg -3'
miRNA:   3'- -GGU-CUGGGCC----CCCGc-GG-GGGGGCa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.