miRNA display CGI


Results 21 - 40 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5623 5' -67.6 NC_001806.1 + 22053 0.67 0.406808
Target:  5'- gCCGuGGCCCGGcgccGGGCccCCgCCCCCGgggCGg -3'
miRNA:   3'- -GGU-CUGGGCC----CCCGc-GG-GGGGGCa--GC- -5'
5623 5' -67.6 NC_001806.1 + 22926 0.68 0.347105
Target:  5'- -gGGACCCGcGGGCcccGCUUCCCCGcCGc -3'
miRNA:   3'- ggUCUGGGCcCCCG---CGGGGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 23944 0.67 0.383673
Target:  5'- gCgGGGCCUGGGGGgGCCgCCggagugguCCGcCGa -3'
miRNA:   3'- -GgUCUGGGCCCCCgCGGgGG--------GGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 24038 0.66 0.428362
Target:  5'- aCGGccGCCUGGGcgggcaauuggaccGGCGCCCCCgacgUGUCGg -3'
miRNA:   3'- gGUC--UGGGCCC--------------CCGCGGGGGg---GCAGC- -5'
5623 5' -67.6 NC_001806.1 + 24796 0.66 0.464035
Target:  5'- --cGGCCCGGGGGCcCUgCCgCCGgCGc -3'
miRNA:   3'- gguCUGGGCCCCCGcGGgGG-GGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 24891 0.66 0.454759
Target:  5'- -aGGugCUGGGGGCggaggcgggcuugGCCacgCCCCCG-CGg -3'
miRNA:   3'- ggUCugGGCCCCCG-------------CGG---GGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 26185 0.67 0.391287
Target:  5'- gCCAGACgCCGaaaacGGGC-CCCCCCCa--- -3'
miRNA:   3'- -GGUCUG-GGCc----CCCGcGGGGGGGcagc -5'
5623 5' -67.6 NC_001806.1 + 26423 0.68 0.333192
Target:  5'- cCCGGGCCCacGGGCGCCgUCCCa--- -3'
miRNA:   3'- -GGUCUGGGccCCCGCGGgGGGGcagc -5'
5623 5' -67.6 NC_001806.1 + 26706 0.68 0.359253
Target:  5'- -uGGGCCCgGGGGGCGgggcugaccccuccCaCCCCCCcUCGc -3'
miRNA:   3'- ggUCUGGG-CCCCCGC--------------G-GGGGGGcAGC- -5'
5623 5' -67.6 NC_001806.1 + 26828 0.7 0.269827
Target:  5'- gCGGGCggggaGGGGGCGCcggagCCCCCCG-CGa -3'
miRNA:   3'- gGUCUGgg---CCCCCGCG-----GGGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 27835 0.67 0.391287
Target:  5'- gCCGGGuuggucCCCGGGgacGGgGCCgCCCCG-CGg -3'
miRNA:   3'- -GGUCU------GGGCCC---CCgCGGgGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 28021 0.66 0.455598
Target:  5'- gCAGACUCGGGc-CGCCCCCUC-UCc -3'
miRNA:   3'- gGUCUGGGCCCccGCGGGGGGGcAGc -5'
5623 5' -67.6 NC_001806.1 + 28224 0.66 0.464035
Target:  5'- gCCAuAUUgGGGGGCGCCauguugggggaCCCCCGa-- -3'
miRNA:   3'- -GGUcUGGgCCCCCGCGG-----------GGGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 28526 0.66 0.438156
Target:  5'- -aGGGCCCGGGGuCGCcgugggaCCCCCUGacUCa -3'
miRNA:   3'- ggUCUGGGCCCCcGCG-------GGGGGGC--AGc -5'
5623 5' -67.6 NC_001806.1 + 29137 0.72 0.202404
Target:  5'- gCGGuCUCGGGGGgGagcCCCCCCCG-CGa -3'
miRNA:   3'- gGUCuGGGCCCCCgC---GGGGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 29168 0.82 0.03667
Target:  5'- -aAGACCCcggcaguugcGGGGGCGCCCCCCC-UCGa -3'
miRNA:   3'- ggUCUGGG----------CCCCCGCGGGGGGGcAGC- -5'
5623 5' -67.6 NC_001806.1 + 29522 0.67 0.406808
Target:  5'- aCCuGACCCuGGGGGgGCaCacggugagggCCCUGUCGc -3'
miRNA:   3'- -GGuCUGGG-CCCCCgCG-Gg---------GGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 29696 0.75 0.118566
Target:  5'- gCGGGCCggggaGGGGGCGUaaccugaucgcgCCCCCCGUUGu -3'
miRNA:   3'- gGUCUGGg----CCCCCGCG------------GGGGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 30034 0.67 0.382917
Target:  5'- gCgGGGCggCCGaGGGGCcggacggGCCCCCuuGUCa -3'
miRNA:   3'- -GgUCUG--GGC-CCCCG-------CGGGGGggCAGc -5'
5623 5' -67.6 NC_001806.1 + 30282 0.69 0.313098
Target:  5'- cCCGGcCCCcGGGGCggagccggccGCCCgCCCCG-CGg -3'
miRNA:   3'- -GGUCuGGGcCCCCG----------CGGG-GGGGCaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.