miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5623 5' -67.6 NC_001806.1 + 121429 0.69 0.275701
Target:  5'- -uGGGCCCGGGGGCcuggugGCaCCUCCCcagCGg -3'
miRNA:   3'- ggUCUGGGCCCCCG------CG-GGGGGGca-GC- -5'
5623 5' -67.6 NC_001806.1 + 121097 0.71 0.216536
Target:  5'- cCCAGACCCcGGGcGCGCCCUCUUcugCGa -3'
miRNA:   3'- -GGUCUGGGcCCC-CGCGGGGGGGca-GC- -5'
5623 5' -67.6 NC_001806.1 + 119643 0.67 0.391287
Target:  5'- aCGGGCCCGGGGGCGaggaCaUCCUGa-- -3'
miRNA:   3'- gGUCUGGGCCCCCGCg---GgGGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 119585 0.67 0.383673
Target:  5'- gCGGugCUGGcGGGUcuggaGCCCCCCgG-CGg -3'
miRNA:   3'- gGUCugGGCC-CCCG-----CGGGGGGgCaGC- -5'
5623 5' -67.6 NC_001806.1 + 119303 0.72 0.197874
Target:  5'- gCAGACCCGcccaucgucGGGGCGuccgaCCCCCCCaUCu -3'
miRNA:   3'- gGUCUGGGC---------CCCCGC-----GGGGGGGcAGc -5'
5623 5' -67.6 NC_001806.1 + 118892 0.66 0.430798
Target:  5'- gCGGAUgCGGuGGGggaGCUucuggCCCCCGUCGu -3'
miRNA:   3'- gGUCUGgGCC-CCCg--CGG-----GGGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 118824 0.66 0.455598
Target:  5'- uCCAGACUCGGGcucaugccaccGGCGaCUguaCCCCGUgGu -3'
miRNA:   3'- -GGUCUGGGCCC-----------CCGC-GGg--GGGGCAgC- -5'
5623 5' -67.6 NC_001806.1 + 108714 0.66 0.430798
Target:  5'- aCGuGCUCGGGGGagaucaCCCCCCCGgggaCGg -3'
miRNA:   3'- gGUcUGGGCCCCCgc----GGGGGGGCa---GC- -5'
5623 5' -67.6 NC_001806.1 + 108357 0.66 0.447245
Target:  5'- uUCAGGcCCCGGuGGuGcCGCUCCCCCa--- -3'
miRNA:   3'- -GGUCU-GGGCC-CC-C-GCGGGGGGGcagc -5'
5623 5' -67.6 NC_001806.1 + 108049 0.69 0.287755
Target:  5'- gCCGGGCCgaCGGaGGGCGCCCCaagCGUg- -3'
miRNA:   3'- -GGUCUGG--GCC-CCCGCGGGGgg-GCAgc -5'
5623 5' -67.6 NC_001806.1 + 107721 0.66 0.464035
Target:  5'- aUCGGugCgGGGGGCaGUCUgCCaaCGUCGa -3'
miRNA:   3'- -GGUCugGgCCCCCG-CGGGgGG--GCAGC- -5'
5623 5' -67.6 NC_001806.1 + 106704 0.72 0.202404
Target:  5'- cCCGGGCCCccGGGCGgCCCCCgGUa- -3'
miRNA:   3'- -GGUCUGGGccCCCGCgGGGGGgCAgc -5'
5623 5' -67.6 NC_001806.1 + 103793 0.71 0.236685
Target:  5'- gCAGAccCCCGGGcGGCGCCgCCgCGgCGg -3'
miRNA:   3'- gGUCU--GGGCCC-CCGCGGgGGgGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 102952 1.08 0.000441
Target:  5'- gCCAGACCCGGGGGCGCCCCCCCGUCGc -3'
miRNA:   3'- -GGUCUGGGCCCCCGCGGGGGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 102339 0.69 0.313098
Target:  5'- --cGuCCCGGGGGaCGUCCCCCgGg-- -3'
miRNA:   3'- gguCuGGGCCCCC-GCGGGGGGgCagc -5'
5623 5' -67.6 NC_001806.1 + 98143 0.7 0.241962
Target:  5'- --cGGCCCGGGGccugcuacaGcCGCCCCCUgGUCa -3'
miRNA:   3'- gguCUGGGCCCC---------C-GCGGGGGGgCAGc -5'
5623 5' -67.6 NC_001806.1 + 97421 0.68 0.333192
Target:  5'- aCCGuGGCCUGGgacuGGGUGCCaaagCgCCCGUCGg -3'
miRNA:   3'- -GGU-CUGGGCC----CCCGCGGg---G-GGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 97364 0.69 0.306607
Target:  5'- aCCaAGGCCCGGGccacGGCGCCgaCCaCCCGg-- -3'
miRNA:   3'- -GG-UCUGGGCCC----CCGCGG--GG-GGGCagc -5'
5623 5' -67.6 NC_001806.1 + 96530 0.68 0.326391
Target:  5'- uCCGGcgccGCCCGccccuGGCGCCCCCCCaaCGg -3'
miRNA:   3'- -GGUC----UGGGCcc---CCGCGGGGGGGcaGC- -5'
5623 5' -67.6 NC_001806.1 + 94805 0.79 0.057268
Target:  5'- cCCGGACgCgGGGGGCgacgggcaGCCCCaCCCGUCGc -3'
miRNA:   3'- -GGUCUG-GgCCCCCG--------CGGGG-GGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.