miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5623 5' -67.6 NC_001806.1 + 150097 0.67 0.368742
Target:  5'- gCAGGCCCaccgcGGGGCgGCCCcguCCCCGg-- -3'
miRNA:   3'- gGUCUGGGc----CCCCG-CGGG---GGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 148797 0.67 0.398999
Target:  5'- gCCGGGgucuuCCUcgcgggGGGGGCuCCCCCCCGa-- -3'
miRNA:   3'- -GGUCU-----GGG------CCCCCGcGGGGGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 148120 0.73 0.157261
Target:  5'- gCCGG-CUgGGGGGCugcgugagacGCCCCgCCCGUCa -3'
miRNA:   3'- -GGUCuGGgCCCCCG----------CGGGG-GGGCAGc -5'
5623 5' -67.6 NC_001806.1 + 147307 0.72 0.180629
Target:  5'- cCCGGGCCCacccuGGccGCGCCCCCCCGg-- -3'
miRNA:   3'- -GGUCUGGG-----CCccCGCGGGGGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 145246 0.69 0.287755
Target:  5'- -gGGACCCaaacgacaGGGGGCGCCCCagaggCUaagGUCGg -3'
miRNA:   3'- ggUCUGGG--------CCCCCGCGGGGg----GG---CAGC- -5'
5623 5' -67.6 NC_001806.1 + 144809 0.67 0.383673
Target:  5'- --cGGCCCGGGacgaGGgGCCCCCgaCCG-CGg -3'
miRNA:   3'- gguCUGGGCCC----CCgCGGGGG--GGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 141417 0.66 0.438978
Target:  5'- aCCAGGCCgGGGcGGCGCgcggCCaaCCGgCGg -3'
miRNA:   3'- -GGUCUGGgCCC-CCGCG----GGggGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 140134 0.67 0.406808
Target:  5'- gCCAGGCgCGGcacacgggguGGGCGCCgcgccuccaCCCCCGa-- -3'
miRNA:   3'- -GGUCUGgGCC----------CCCGCGG---------GGGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 137641 0.66 0.447245
Target:  5'- aCGGACCCuGGgguuggccgaGGGCGCCCugacgcgguuggCCCCGg-- -3'
miRNA:   3'- gGUCUGGG-CC----------CCCGCGGG------------GGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 136914 0.67 0.39436
Target:  5'- cCCAGccguCCuCGGGGGagcacagcgcuuccgUGUCCCCCCG-CGc -3'
miRNA:   3'- -GGUCu---GG-GCCCCC---------------GCGGGGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 135865 0.67 0.368742
Target:  5'- --cGGCCgGGGcgucuaucaGGUGCCCCCCggccuCGUCGa -3'
miRNA:   3'- gguCUGGgCCC---------CCGCGGGGGG-----GCAGC- -5'
5623 5' -67.6 NC_001806.1 + 130074 0.68 0.361428
Target:  5'- aCGGcUCCGGGGcGCGCUCggagCCCGUCu -3'
miRNA:   3'- gGUCuGGGCCCC-CGCGGGg---GGGCAGc -5'
5623 5' -67.6 NC_001806.1 + 127547 0.68 0.361428
Target:  5'- gCGGGCUCGGGGuCGUaCCCCCCaaCGg -3'
miRNA:   3'- gGUCUGGGCCCCcGCG-GGGGGGcaGC- -5'
5623 5' -67.6 NC_001806.1 + 127271 0.69 0.306607
Target:  5'- gCGGAccCCCGGaGGCGCCUgCCCCGcCa -3'
miRNA:   3'- gGUCU--GGGCCcCCGCGGG-GGGGCaGc -5'
5623 5' -67.6 NC_001806.1 + 127211 0.65 0.469989
Target:  5'- gCGGGcCCCGGGGagacaGCGCcugcguucaucggaCCCCCCcUCGc -3'
miRNA:   3'- gGUCU-GGGCCCC-----CGCG--------------GGGGGGcAGC- -5'
5623 5' -67.6 NC_001806.1 + 125549 0.67 0.382917
Target:  5'- cCCAGAcauuccgcuaucuCCUGGGGGCaCCCaCgCCCG-CGa -3'
miRNA:   3'- -GGUCU-------------GGGCCCCCGcGGG-G-GGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 125194 0.68 0.364342
Target:  5'- aUCAGcguucACCCGGcGGCGCgcucaaccaccgcucCCCCCaCGUCGu -3'
miRNA:   3'- -GGUC-----UGGGCCcCCGCG---------------GGGGG-GCAGC- -5'
5623 5' -67.6 NC_001806.1 + 123955 0.67 0.406808
Target:  5'- gCAGAuCCCaGGcGGCGuuaaccgcacCCCCCUCGUCc -3'
miRNA:   3'- gGUCU-GGGcCC-CCGC----------GGGGGGGCAGc -5'
5623 5' -67.6 NC_001806.1 + 121850 0.66 0.430798
Target:  5'- aCCAG-CgCCGGGuGGCGCCUgUgUGUCu -3'
miRNA:   3'- -GGUCuG-GGCCC-CCGCGGGgGgGCAGc -5'
5623 5' -67.6 NC_001806.1 + 121548 0.68 0.339402
Target:  5'- gCCAGgaucaccaaccACCCGGGGggcugcgaguccuGCGCCCCgCCGcCc -3'
miRNA:   3'- -GGUC-----------UGGGCCCC-------------CGCGGGGgGGCaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.