miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5626 3' -54.8 NC_001806.1 + 32623 0.69 0.822214
Target:  5'- aGGGUGGGAGGGgGGGAaaaGAAcggGCUGg -3'
miRNA:   3'- -CCCGCCUUUCCgCUCUcg-CUUa--CGAU- -5'
5626 3' -54.8 NC_001806.1 + 33647 0.7 0.737886
Target:  5'- cGGGCGGggGGG-GGGugucGCGGGccgucUGCUGg -3'
miRNA:   3'- -CCCGCCuuUCCgCUCu---CGCUU-----ACGAU- -5'
5626 3' -54.8 NC_001806.1 + 33816 0.66 0.910934
Target:  5'- cGGGUGGAcucgcggGGGGCcgGAGGGUGGAagGCa- -3'
miRNA:   3'- -CCCGCCU-------UUCCG--CUCUCGCUUa-CGau -5'
5626 3' -54.8 NC_001806.1 + 34002 0.77 0.400578
Target:  5'- gGGGCGG--GGGCGuGGGCGGggGUGCUc -3'
miRNA:   3'- -CCCGCCuuUCCGCuCUCGCU--UACGAu -5'
5626 3' -54.8 NC_001806.1 + 34061 0.66 0.911542
Target:  5'- uGGGUGGGAgaAGGCGAGGagacugggguGgGggUGUc- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUCU----------CgCuuACGau -5'
5626 3' -54.8 NC_001806.1 + 34477 0.69 0.804496
Target:  5'- aGGCGGggGGGgGGGAGaCGGGgggaaaGCa- -3'
miRNA:   3'- cCCGCCuuUCCgCUCUC-GCUUa-----CGau -5'
5626 3' -54.8 NC_001806.1 + 34787 0.7 0.747765
Target:  5'- gGGGgGGggGGGgGGGGGCGGGa---- -3'
miRNA:   3'- -CCCgCCuuUCCgCUCUCGCUUacgau -5'
5626 3' -54.8 NC_001806.1 + 34902 0.69 0.79539
Target:  5'- gGGGgGGAGAGGgGAGAGgGGggGa-- -3'
miRNA:   3'- -CCCgCCUUUCCgCUCUCgCUuaCgau -5'
5626 3' -54.8 NC_001806.1 + 34935 0.69 0.79539
Target:  5'- gGGGgGGAGAGGgGAGAGgGGggGa-- -3'
miRNA:   3'- -CCCgCCUUUCCgCUCUCgCUuaCgau -5'
5626 3' -54.8 NC_001806.1 + 34969 0.69 0.79539
Target:  5'- gGGGgGGAGAGGgGAGAGgGGggGa-- -3'
miRNA:   3'- -CCCgCCUUUCCgCUCUCgCUuaCgau -5'
5626 3' -54.8 NC_001806.1 + 35003 0.69 0.79539
Target:  5'- gGGGgGGAGAGGgGAGAGgGGggGa-- -3'
miRNA:   3'- -CCCgCCUUUCCgCUCUCgCUuaCgau -5'
5626 3' -54.8 NC_001806.1 + 35037 0.69 0.79539
Target:  5'- gGGGgGGAGAGGgGAGAGgGGggGa-- -3'
miRNA:   3'- -CCCgCCUUUCCgCUCUCgCUuaCgau -5'
5626 3' -54.8 NC_001806.1 + 37810 0.69 0.792629
Target:  5'- cGGGCGGggGGGCaaucGccagcgucauuagcGGGGgGggUGCUu -3'
miRNA:   3'- -CCCGCCuuUCCG----C--------------UCUCgCuuACGAu -5'
5626 3' -54.8 NC_001806.1 + 38275 0.68 0.829104
Target:  5'- cGGGCGGAccgccGGGCGAGcGGCGucgaguaucgGCUc -3'
miRNA:   3'- -CCCGCCUu----UCCGCUC-UCGCuua-------CGAu -5'
5626 3' -54.8 NC_001806.1 + 38810 0.71 0.68726
Target:  5'- -cGCGGGGacccGGGCGGGGGUGGAUacGCUGg -3'
miRNA:   3'- ccCGCCUU----UCCGCUCUCGCUUA--CGAU- -5'
5626 3' -54.8 NC_001806.1 + 42324 0.67 0.898919
Target:  5'- gGGGCGG-GGGGCGuGGG-GAAUcGCg- -3'
miRNA:   3'- -CCCGCCuUUCCGCuCUCgCUUA-CGau -5'
5626 3' -54.8 NC_001806.1 + 43979 0.66 0.937832
Target:  5'- uGGGaUGGAGGGGCGGGuGUGAuagacccacagGCa- -3'
miRNA:   3'- -CCC-GCCUUUCCGCUCuCGCUua---------CGau -5'
5626 3' -54.8 NC_001806.1 + 45327 0.67 0.885339
Target:  5'- aGGGCGGGcgcgauGGGauCGGGGGCGcgcGGUGCg- -3'
miRNA:   3'- -CCCGCCUu-----UCC--GCUCUCGC---UUACGau -5'
5626 3' -54.8 NC_001806.1 + 48861 0.71 0.676955
Target:  5'- aGGGCGGcccgcguauAAAGGCGAGAGCGc------ -3'
miRNA:   3'- -CCCGCC---------UUUCCGCUCUCGCuuacgau -5'
5626 3' -54.8 NC_001806.1 + 49498 0.69 0.804496
Target:  5'- gGGGCGGGucGGCGGuucGCGggUgGCg- -3'
miRNA:   3'- -CCCGCCUuuCCGCUcu-CGCuuA-CGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.