miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5626 3' -54.8 NC_001806.1 + 25166 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25200 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25234 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25268 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25302 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25336 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25370 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25404 0.79 0.312668
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGuggugGUGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCU-----UACGau -5'
5626 3' -54.8 NC_001806.1 + 25541 0.68 0.863246
Target:  5'- gGGGCcgGGGAGGGCuGGGGcCGGGgaggGCUGg -3'
miRNA:   3'- -CCCG--CCUUUCCGcUCUC-GCUUa---CGAU- -5'
5626 3' -54.8 NC_001806.1 + 25573 0.68 0.863246
Target:  5'- gGGGCcgGGGAGGGCuGGGGcCGGGgaggGCUGg -3'
miRNA:   3'- -CCCG--CCUUUCCGcUCUC-GCUUa---CGAU- -5'
5626 3' -54.8 NC_001806.1 + 25605 0.68 0.863246
Target:  5'- gGGGCcgGGGAGGGCuGGGGcCGGGgaggGCUGg -3'
miRNA:   3'- -CCCG--CCUUUCCGcUCUC-GCUUa---CGAU- -5'
5626 3' -54.8 NC_001806.1 + 25637 0.66 0.933845
Target:  5'- gGGGCugGGGAGGGCuggggcuggggaGGGGGCGGugGUGUg- -3'
miRNA:   3'- -CCCG--CCUUUCCG------------CUCUCGCU--UACGau -5'
5626 3' -54.8 NC_001806.1 + 25949 0.74 0.542638
Target:  5'- gGGGCGGGGccGCGGGAGCGGggGgaGg -3'
miRNA:   3'- -CCCGCCUUucCGCUCUCGCUuaCgaU- -5'
5626 3' -54.8 NC_001806.1 + 27246 0.66 0.923187
Target:  5'- aGGGCGGGccgccucgGGGGCGGGAcuggccaaucgGCGGccGCc- -3'
miRNA:   3'- -CCCGCCU--------UUCCGCUCU-----------CGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 28856 0.78 0.350726
Target:  5'- aGGCGGggGGGgGAGAgggggaacucGUGggUGCUGa -3'
miRNA:   3'- cCCGCCuuUCCgCUCU----------CGCuuACGAU- -5'
5626 3' -54.8 NC_001806.1 + 29208 0.69 0.79539
Target:  5'- cGGGgGGAgcGaCGAGGGCGAcguGUGCg- -3'
miRNA:   3'- -CCCgCCUuuCcGCUCUCGCU---UACGau -5'
5626 3' -54.8 NC_001806.1 + 29678 0.67 0.877473
Target:  5'- cGGGCGGGcgaggaaAGGGCGGGccGGgGAGgggGCg- -3'
miRNA:   3'- -CCCGCCU-------UUCCGCUC--UCgCUUa--CGau -5'
5626 3' -54.8 NC_001806.1 + 31367 0.66 0.938804
Target:  5'- -uGUGGGGAGGgGGGGGuCGGGcGCUGg -3'
miRNA:   3'- ccCGCCUUUCCgCUCUC-GCUUaCGAU- -5'
5626 3' -54.8 NC_001806.1 + 31958 0.67 0.898919
Target:  5'- gGGGUGGcgGGGCGGGA-CGGG-GCg- -3'
miRNA:   3'- -CCCGCCuuUCCGCUCUcGCUUaCGau -5'
5626 3' -54.8 NC_001806.1 + 32027 0.75 0.502715
Target:  5'- gGGGCGGAGGGGUGGGGGgGGggGa-- -3'
miRNA:   3'- -CCCGCCUUUCCGCUCUCgCUuaCgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.