miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5626 3' -54.8 NC_001806.1 + 25949 0.74 0.542638
Target:  5'- gGGGCGGGGccGCGGGAGCGGggGgaGg -3'
miRNA:   3'- -CCCGCCUUucCGCUCUCGCUuaCgaU- -5'
5626 3' -54.8 NC_001806.1 + 12101 0.73 0.583553
Target:  5'- aGGGUGGGAuauGCGGGGcuGUGAGUGCUGu -3'
miRNA:   3'- -CCCGCCUUuc-CGCUCU--CGCUUACGAU- -5'
5626 3' -54.8 NC_001806.1 + 81843 0.72 0.618799
Target:  5'- cGGGCGGGAGGGCccuuggguuaacaagGGGAGCGg--GCc- -3'
miRNA:   3'- -CCCGCCUUUCCG---------------CUCUCGCuuaCGau -5'
5626 3' -54.8 NC_001806.1 + 147827 0.72 0.62504
Target:  5'- gGGGCcuguggGGAGAGGcCGGGGGgGAGUcGCUGa -3'
miRNA:   3'- -CCCG------CCUUUCC-GCUCUCgCUUA-CGAU- -5'
5626 3' -54.8 NC_001806.1 + 151274 0.72 0.62504
Target:  5'- cGGGCGGuGGGGGCcggggccgGGGGGCGGcgGCg- -3'
miRNA:   3'- -CCCGCC-UUUCCG--------CUCUCGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 2987 0.72 0.645848
Target:  5'- cGGcGCGGGGAGGCGGcGGCGGccGCc- -3'
miRNA:   3'- -CC-CGCCUUUCCGCUcUCGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 127937 0.72 0.65624
Target:  5'- aGGCGGcgaccAGGGCGAGGGCGAc-GCg- -3'
miRNA:   3'- cCCGCCu----UUCCGCUCUCGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 48861 0.71 0.676955
Target:  5'- aGGGCGGcccgcguauAAAGGCGAGAGCGc------ -3'
miRNA:   3'- -CCCGCC---------UUUCCGCUCUCGCuuacgau -5'
5626 3' -54.8 NC_001806.1 + 38810 0.71 0.68726
Target:  5'- -cGCGGGGacccGGGCGGGGGUGGAUacGCUGg -3'
miRNA:   3'- ccCGCCUU----UCCGCUCUCGCUUA--CGAU- -5'
5626 3' -54.8 NC_001806.1 + 151216 0.71 0.68726
Target:  5'- aGGCGGAAGGggcGCGAGGGgGggUGg-- -3'
miRNA:   3'- cCCGCCUUUC---CGCUCUCgCuuACgau -5'
5626 3' -54.8 NC_001806.1 + 89780 0.71 0.717854
Target:  5'- gGGGCgugGGAGGGGCuGGGGCGGAccgGCa- -3'
miRNA:   3'- -CCCG---CCUUUCCGcUCUCGCUUa--CGau -5'
5626 3' -54.8 NC_001806.1 + 6410 0.71 0.717854
Target:  5'- uGGGCGGAggAGGGgGGGAcGCGGggGUg- -3'
miRNA:   3'- -CCCGCCU--UUCCgCUCU-CGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 5493 0.7 0.727913
Target:  5'- cGGCGGGAAGGagGAGcAGCGGAgGCc- -3'
miRNA:   3'- cCCGCCUUUCCg-CUC-UCGCUUaCGau -5'
5626 3' -54.8 NC_001806.1 + 13139 0.7 0.737886
Target:  5'- uGGGgGGAGAGGCaggcuGAcGGGgGGAUGCg- -3'
miRNA:   3'- -CCCgCCUUUCCG-----CU-CUCgCUUACGau -5'
5626 3' -54.8 NC_001806.1 + 33647 0.7 0.737886
Target:  5'- cGGGCGGggGGG-GGGugucGCGGGccgucUGCUGg -3'
miRNA:   3'- -CCCGCCuuUCCgCUCu---CGCUU-----ACGAU- -5'
5626 3' -54.8 NC_001806.1 + 86038 0.7 0.747765
Target:  5'- aGGGCcgcgGGggGGGCGggcucguccccuGGGGCGGcgGCg- -3'
miRNA:   3'- -CCCG----CCuuUCCGC------------UCUCGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 34787 0.7 0.747765
Target:  5'- gGGGgGGggGGGgGGGGGCGGGa---- -3'
miRNA:   3'- -CCCgCCuuUCCgCUCUCGCUUacgau -5'
5626 3' -54.8 NC_001806.1 + 76066 0.7 0.757538
Target:  5'- uGGCGGggGGGCugcuGGAGCGGGcccagGCg- -3'
miRNA:   3'- cCCGCCuuUCCGc---UCUCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 95486 0.7 0.757538
Target:  5'- -cGCGGAcguGCGGGAGCGAcgGCg- -3'
miRNA:   3'- ccCGCCUuucCGCUCUCGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 145550 0.7 0.757538
Target:  5'- gGGGgGGAGugcGGGgGAGGGgGggUGUg- -3'
miRNA:   3'- -CCCgCCUU---UCCgCUCUCgCuuACGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.