miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5626 3' -54.8 NC_001806.1 + 101411 1.1 0.003054
Target:  5'- cGGGCGGAAAGGCGAGAGCGAAUGCUAa -3'
miRNA:   3'- -CCCGCCUUUCCGCUCUCGCUUACGAU- -5'
5626 3' -54.8 NC_001806.1 + 25404 0.79 0.312668
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGuggugGUGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCU-----UACGau -5'
5626 3' -54.8 NC_001806.1 + 66231 0.78 0.320022
Target:  5'- gGGGCGGAGcguuguguGGGCG-GGGCGuuUGCUAc -3'
miRNA:   3'- -CCCGCCUU--------UCCGCuCUCGCuuACGAU- -5'
5626 3' -54.8 NC_001806.1 + 28856 0.78 0.350726
Target:  5'- aGGCGGggGGGgGAGAgggggaacucGUGggUGCUGa -3'
miRNA:   3'- cCCGCCuuUCCgCUCU----------CGCuuACGAU- -5'
5626 3' -54.8 NC_001806.1 + 10393 0.77 0.366844
Target:  5'- gGGGCGGGggGAGGCGGGAGcCGGGgggucccGCUGg -3'
miRNA:   3'- -CCCGCCU--UUCCGCUCUC-GCUUa------CGAU- -5'
5626 3' -54.8 NC_001806.1 + 34002 0.77 0.400578
Target:  5'- gGGGCGG--GGGCGuGGGCGGggGUGCUc -3'
miRNA:   3'- -CCCGCCuuUCCGCuCUCGCU--UACGAu -5'
5626 3' -54.8 NC_001806.1 + 5662 0.76 0.436225
Target:  5'- uGGGCGGGGc-GCGAGGGCGggUGg-- -3'
miRNA:   3'- -CCCGCCUUucCGCUCUCGCuuACgau -5'
5626 3' -54.8 NC_001806.1 + 25370 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25336 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25302 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25268 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25234 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25200 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25166 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25132 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25098 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 6455 0.75 0.502715
Target:  5'- gGGGCGGAgGAGGgGGGAcGCGGggGCg- -3'
miRNA:   3'- -CCCGCCU-UUCCgCUCU-CGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 6499 0.75 0.502715
Target:  5'- gGGGCGGAgGAGGgGGGAcGCGGggGCg- -3'
miRNA:   3'- -CCCGCCU-UUCCgCUCU-CGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 6543 0.75 0.502715
Target:  5'- gGGGCGGAgGAGGgGGGAcGCGGggGCg- -3'
miRNA:   3'- -CCCGCCU-UUCCgCUCU-CGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 32027 0.75 0.502715
Target:  5'- gGGGCGGAGGGGUGGGGGgGGggGa-- -3'
miRNA:   3'- -CCCGCCUUUCCGCUCUCgCUuaCgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.