miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5626 3' -54.8 NC_001806.1 + 2517 0.67 0.8782
Target:  5'- uGGGCGGcGGGGGCGGGcccGGCGcAccGCg- -3'
miRNA:   3'- -CCCGCC-UUUCCGCUC---UCGC-UuaCGau -5'
5626 3' -54.8 NC_001806.1 + 2804 0.68 0.870833
Target:  5'- -cGCGGGcuGGGCGGGGGCGg--GCUc -3'
miRNA:   3'- ccCGCCUu-UCCGCUCUCGCuuaCGAu -5'
5626 3' -54.8 NC_001806.1 + 2987 0.72 0.645848
Target:  5'- cGGcGCGGGGAGGCGGcGGCGGccGCc- -3'
miRNA:   3'- -CC-CGCCUUUCCGCUcUCGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 4427 0.69 0.799051
Target:  5'- gGGGUGGcccGGGCGGGGGCGGcguccgcccggggGCUGc -3'
miRNA:   3'- -CCCGCCuu-UCCGCUCUCGCUua-----------CGAU- -5'
5626 3' -54.8 NC_001806.1 + 5493 0.7 0.727913
Target:  5'- cGGCGGGAAGGagGAGcAGCGGAgGCc- -3'
miRNA:   3'- cCCGCCUUUCCg-CUC-UCGCUUaCGau -5'
5626 3' -54.8 NC_001806.1 + 5662 0.76 0.436225
Target:  5'- uGGGCGGGGc-GCGAGGGCGggUGg-- -3'
miRNA:   3'- -CCCGCCUUucCGCUCUCGCuuACgau -5'
5626 3' -54.8 NC_001806.1 + 6080 0.67 0.885339
Target:  5'- gGGGCGGGcccGGGCGgcggGGGGCGggU-CUc -3'
miRNA:   3'- -CCCGCCUu--UCCGC----UCUCGCuuAcGAu -5'
5626 3' -54.8 NC_001806.1 + 6410 0.71 0.717854
Target:  5'- uGGGCGGAggAGGGgGGGAcGCGGggGUg- -3'
miRNA:   3'- -CCCGCCU--UUCCgCUCU-CGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 6455 0.75 0.502715
Target:  5'- gGGGCGGAgGAGGgGGGAcGCGGggGCg- -3'
miRNA:   3'- -CCCGCCU-UUCCgCUCU-CGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 6499 0.75 0.502715
Target:  5'- gGGGCGGAgGAGGgGGGAcGCGGggGCg- -3'
miRNA:   3'- -CCCGCCU-UUCCgCUCU-CGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 6543 0.75 0.502715
Target:  5'- gGGGCGGAgGAGGgGGGAcGCGGggGCg- -3'
miRNA:   3'- -CCCGCCU-UUCCgCUCU-CGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 10393 0.77 0.366844
Target:  5'- gGGGCGGGggGAGGCGGGAGcCGGGgggucccGCUGg -3'
miRNA:   3'- -CCCGCCU--UUCCGCUCUC-GCUUa------CGAU- -5'
5626 3' -54.8 NC_001806.1 + 12101 0.73 0.583553
Target:  5'- aGGGUGGGAuauGCGGGGcuGUGAGUGCUGu -3'
miRNA:   3'- -CCCGCCUUuc-CGCUCU--CGCUUACGAU- -5'
5626 3' -54.8 NC_001806.1 + 13139 0.7 0.737886
Target:  5'- uGGGgGGAGAGGCaggcuGAcGGGgGGAUGCg- -3'
miRNA:   3'- -CCCgCCUUUCCG-----CU-CUCgCUUACGau -5'
5626 3' -54.8 NC_001806.1 + 19492 0.68 0.830809
Target:  5'- gGGGCgGGAAGGGCGcuuGCGcuUGCg- -3'
miRNA:   3'- -CCCG-CCUUUCCGCucuCGCuuACGau -5'
5626 3' -54.8 NC_001806.1 + 20718 0.68 0.847431
Target:  5'- uGGGCccgccGGggGGGCGGGGGgcCGGcgGCc- -3'
miRNA:   3'- -CCCG-----CCuuUCCGCUCUC--GCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 24870 0.68 0.855443
Target:  5'- uGGCGGc--GGCGGGGGCcguggaGGUGCUGg -3'
miRNA:   3'- cCCGCCuuuCCGCUCUCGc-----UUACGAU- -5'
5626 3' -54.8 NC_001806.1 + 25006 0.67 0.905352
Target:  5'- cGGGcCGGGAcgGGGCGGG-GCGcuUGUg- -3'
miRNA:   3'- -CCC-GCCUU--UCCGCUCuCGCuuACGau -5'
5626 3' -54.8 NC_001806.1 + 25098 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 25132 0.75 0.464126
Target:  5'- gGGGCGGGAggGGGCGAGgGGCGGGaggggGCg- -3'
miRNA:   3'- -CCCGCCUU--UCCGCUC-UCGCUUa----CGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.