miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5626 3' -54.8 NC_001806.1 + 151560 0.66 0.911542
Target:  5'- gGGGCGGcGGGGGCcgcGAuGGCGGcgGCg- -3'
miRNA:   3'- -CCCGCC-UUUCCG---CUcUCGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 151428 0.7 0.767197
Target:  5'- aGGCGGggGcccaccGGCgGGGGGCGGcgGCg- -3'
miRNA:   3'- cCCGCCuuU------CCG-CUCUCGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 151274 0.72 0.62504
Target:  5'- cGGGCGGuGGGGGCcggggccgGGGGGCGGcgGCg- -3'
miRNA:   3'- -CCCGCC-UUUCCG--------CUCUCGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 151216 0.71 0.68726
Target:  5'- aGGCGGAAGGggcGCGAGGGgGggUGg-- -3'
miRNA:   3'- cCCGCCUUUC---CGCUCUCgCuuACgau -5'
5626 3' -54.8 NC_001806.1 + 151192 0.69 0.81344
Target:  5'- aGGCGG-AGGGCGAGGcGCGGcgGa-- -3'
miRNA:   3'- cCCGCCuUUCCGCUCU-CGCUuaCgau -5'
5626 3' -54.8 NC_001806.1 + 148180 0.66 0.92864
Target:  5'- -cGUGGggGGGCGcGGGGCGuccgGCg- -3'
miRNA:   3'- ccCGCCuuUCCGC-UCUCGCuua-CGau -5'
5626 3' -54.8 NC_001806.1 + 147827 0.72 0.62504
Target:  5'- gGGGCcuguggGGAGAGGcCGGGGGgGAGUcGCUGa -3'
miRNA:   3'- -CCCG------CCUUUCC-GCUCUCgCUUA-CGAU- -5'
5626 3' -54.8 NC_001806.1 + 147782 0.66 0.917488
Target:  5'- cGGGgGGcccGGGGCgGGGGGCGGAgccugGCa- -3'
miRNA:   3'- -CCCgCCu--UUCCG-CUCUCGCUUa----CGau -5'
5626 3' -54.8 NC_001806.1 + 145683 0.68 0.847431
Target:  5'- gGGGUGGGAagggucGGGgGAGGGgGGAUGgaGu -3'
miRNA:   3'- -CCCGCCUU------UCCgCUCUCgCUUACgaU- -5'
5626 3' -54.8 NC_001806.1 + 145550 0.7 0.757538
Target:  5'- gGGGgGGAGugcGGGgGAGGGgGggUGUg- -3'
miRNA:   3'- -CCCgCCUU---UCCgCUCUCgCuuACGau -5'
5626 3' -54.8 NC_001806.1 + 143797 0.67 0.885339
Target:  5'- gGGGaCGGAGGGGacggaGGGAGgGggUGaCg- -3'
miRNA:   3'- -CCC-GCCUUUCCg----CUCUCgCuuAC-Gau -5'
5626 3' -54.8 NC_001806.1 + 143258 0.68 0.863246
Target:  5'- gGGGgGGAuguGGGCGGGGGUGc--GCg- -3'
miRNA:   3'- -CCCgCCUu--UCCGCUCUCGCuuaCGau -5'
5626 3' -54.8 NC_001806.1 + 142167 0.68 0.863246
Target:  5'- gGGGUGGGGuccgacguGGCGAugauGGGCGGcgGCg- -3'
miRNA:   3'- -CCCGCCUUu-------CCGCU----CUCGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 136998 0.66 0.938804
Target:  5'- cGGCGGcc-GGCGGGgAGCGccaGCUAg -3'
miRNA:   3'- cCCGCCuuuCCGCUC-UCGCuuaCGAU- -5'
5626 3' -54.8 NC_001806.1 + 135106 0.66 0.911542
Target:  5'- gGGGa-GggGGGCGGGGGCagcgcugcGUGCUGg -3'
miRNA:   3'- -CCCgcCuuUCCGCUCUCGcu------UACGAU- -5'
5626 3' -54.8 NC_001806.1 + 133831 0.68 0.870084
Target:  5'- uGGCGGGAguaugGGGCGAGGGgGGgaaguuuGUGUa- -3'
miRNA:   3'- cCCGCCUU-----UCCGCUCUCgCU-------UACGau -5'
5626 3' -54.8 NC_001806.1 + 129736 0.66 0.933845
Target:  5'- gGGaGUGGAAGcgcgccuuGGCGGGGGCGAuaacaucUGCa- -3'
miRNA:   3'- -CC-CGCCUUU--------CCGCUCUCGCUu------ACGau -5'
5626 3' -54.8 NC_001806.1 + 127937 0.72 0.65624
Target:  5'- aGGCGGcgaccAGGGCGAGGGCGAc-GCg- -3'
miRNA:   3'- cCCGCCu----UUCCGCUCUCGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 101778 0.66 0.921504
Target:  5'- uGGGCGuGGAuaaccuccccacagGGGUGGGGuuuguGCGggUGCg- -3'
miRNA:   3'- -CCCGC-CUU--------------UCCGCUCU-----CGCuuACGau -5'
5626 3' -54.8 NC_001806.1 + 101411 1.1 0.003054
Target:  5'- cGGGCGGAAAGGCGAGAGCGAAUGCUAa -3'
miRNA:   3'- -CCCGCCUUUCCGCUCUCGCUUACGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.