miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5626 3' -54.8 NC_001806.1 + 42324 0.67 0.898919
Target:  5'- gGGGCGG-GGGGCGuGGG-GAAUcGCg- -3'
miRNA:   3'- -CCCGCCuUUCCGCuCUCgCUUA-CGau -5'
5626 3' -54.8 NC_001806.1 + 100390 0.67 0.898919
Target:  5'- cGGGCGGc---GCGGGGGCcgGggUGCc- -3'
miRNA:   3'- -CCCGCCuuucCGCUCUCG--CuuACGau -5'
5626 3' -54.8 NC_001806.1 + 31958 0.67 0.898919
Target:  5'- gGGGUGGcgGGGCGGGA-CGGG-GCg- -3'
miRNA:   3'- -CCCGCCuuUCCGCUCUcGCUUaCGau -5'
5626 3' -54.8 NC_001806.1 + 57670 0.67 0.892247
Target:  5'- aGGCGGAGaAGGCGccGGGGCu--UGCUu -3'
miRNA:   3'- cCCGCCUU-UCCGC--UCUCGcuuACGAu -5'
5626 3' -54.8 NC_001806.1 + 62622 0.67 0.885339
Target:  5'- gGGGUGGguGGGCuccaggcacGGGAGCGccUGCg- -3'
miRNA:   3'- -CCCGCCuuUCCG---------CUCUCGCuuACGau -5'
5626 3' -54.8 NC_001806.1 + 6080 0.67 0.885339
Target:  5'- gGGGCGGGcccGGGCGgcggGGGGCGggU-CUc -3'
miRNA:   3'- -CCCGCCUu--UCCGC----UCUCGCuuAcGAu -5'
5626 3' -54.8 NC_001806.1 + 143797 0.67 0.885339
Target:  5'- gGGGaCGGAGGGGacggaGGGAGgGggUGaCg- -3'
miRNA:   3'- -CCC-GCCUUUCCg----CUCUCgCuuAC-Gau -5'
5626 3' -54.8 NC_001806.1 + 45327 0.67 0.885339
Target:  5'- aGGGCGGGcgcgauGGGauCGGGGGCGcgcGGUGCg- -3'
miRNA:   3'- -CCCGCCUu-----UCC--GCUCUCGC---UUACGau -5'
5626 3' -54.8 NC_001806.1 + 2517 0.67 0.8782
Target:  5'- uGGGCGGcGGGGGCGGGcccGGCGcAccGCg- -3'
miRNA:   3'- -CCCGCC-UUUCCGCUC---UCGC-UuaCGau -5'
5626 3' -54.8 NC_001806.1 + 81650 0.67 0.8782
Target:  5'- cGGuCGGGAGGGCuguguGGGGCGAagGCg- -3'
miRNA:   3'- cCC-GCCUUUCCGc----UCUCGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 29678 0.67 0.877473
Target:  5'- cGGGCGGGcgaggaaAGGGCGGGccGGgGAGgggGCg- -3'
miRNA:   3'- -CCCGCCU-------UUCCGCUC--UCgCUUa--CGau -5'
5626 3' -54.8 NC_001806.1 + 2804 0.68 0.870833
Target:  5'- -cGCGGGcuGGGCGGGGGCGg--GCUc -3'
miRNA:   3'- ccCGCCUu-UCCGCUCUCGCuuaCGAu -5'
5626 3' -54.8 NC_001806.1 + 95298 0.68 0.870833
Target:  5'- gGGGCGG-GGGGCGc-GGCGGAcGCg- -3'
miRNA:   3'- -CCCGCCuUUCCGCucUCGCUUaCGau -5'
5626 3' -54.8 NC_001806.1 + 133831 0.68 0.870084
Target:  5'- uGGCGGGAguaugGGGCGAGGGgGGgaaguuuGUGUa- -3'
miRNA:   3'- cCCGCCUU-----UCCGCUCUCgCU-------UACGau -5'
5626 3' -54.8 NC_001806.1 + 89511 0.68 0.863246
Target:  5'- uGGCGGAuccGGGCGGcGAGC---UGCUGc -3'
miRNA:   3'- cCCGCCUu--UCCGCU-CUCGcuuACGAU- -5'
5626 3' -54.8 NC_001806.1 + 142167 0.68 0.863246
Target:  5'- gGGGUGGGGuccgacguGGCGAugauGGGCGGcgGCg- -3'
miRNA:   3'- -CCCGCCUUu-------CCGCU----CUCGCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 25605 0.68 0.863246
Target:  5'- gGGGCcgGGGAGGGCuGGGGcCGGGgaggGCUGg -3'
miRNA:   3'- -CCCG--CCUUUCCGcUCUC-GCUUa---CGAU- -5'
5626 3' -54.8 NC_001806.1 + 25573 0.68 0.863246
Target:  5'- gGGGCcgGGGAGGGCuGGGGcCGGGgaggGCUGg -3'
miRNA:   3'- -CCCG--CCUUUCCGcUCUC-GCUUa---CGAU- -5'
5626 3' -54.8 NC_001806.1 + 25541 0.68 0.863246
Target:  5'- gGGGCcgGGGAGGGCuGGGGcCGGGgaggGCUGg -3'
miRNA:   3'- -CCCG--CCUUUCCGcUCUC-GCUUa---CGAU- -5'
5626 3' -54.8 NC_001806.1 + 143258 0.68 0.863246
Target:  5'- gGGGgGGAuguGGGCGGGGGUGc--GCg- -3'
miRNA:   3'- -CCCgCCUu--UCCGCUCUCGCuuaCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.