miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5626 3' -54.8 NC_001806.1 + 24870 0.68 0.855443
Target:  5'- uGGCGGc--GGCGGGGGCcguggaGGUGCUGg -3'
miRNA:   3'- cCCGCCuuuCCGCUCUCGc-----UUACGAU- -5'
5626 3' -54.8 NC_001806.1 + 93715 0.68 0.854651
Target:  5'- gGGGUGGGggaaccuAGGGCGGGgcGGgGAAUGUg- -3'
miRNA:   3'- -CCCGCCU-------UUCCGCUC--UCgCUUACGau -5'
5626 3' -54.8 NC_001806.1 + 145683 0.68 0.847431
Target:  5'- gGGGUGGGAagggucGGGgGAGGGgGGAUGgaGu -3'
miRNA:   3'- -CCCGCCUU------UCCgCUCUCgCUUACgaU- -5'
5626 3' -54.8 NC_001806.1 + 20718 0.68 0.847431
Target:  5'- uGGGCccgccGGggGGGCGGGGGgcCGGcgGCc- -3'
miRNA:   3'- -CCCG-----CCuuUCCGCUCUC--GCUuaCGau -5'
5626 3' -54.8 NC_001806.1 + 99641 0.68 0.847431
Target:  5'- gGGGCGGu--GGCGGGccuGGCGGGcagGCa- -3'
miRNA:   3'- -CCCGCCuuuCCGCUC---UCGCUUa--CGau -5'
5626 3' -54.8 NC_001806.1 + 71532 0.68 0.839217
Target:  5'- cGGGCGGGcgGGGGgGGGGGUGGAa---- -3'
miRNA:   3'- -CCCGCCU--UUCCgCUCUCGCUUacgau -5'
5626 3' -54.8 NC_001806.1 + 19492 0.68 0.830809
Target:  5'- gGGGCgGGAAGGGCGcuuGCGcuUGCg- -3'
miRNA:   3'- -CCCG-CCUUUCCGCucuCGCuuACGau -5'
5626 3' -54.8 NC_001806.1 + 38275 0.68 0.829104
Target:  5'- cGGGCGGAccgccGGGCGAGcGGCGucgaguaucgGCUc -3'
miRNA:   3'- -CCCGCCUu----UCCGCUC-UCGCuua-------CGAu -5'
5626 3' -54.8 NC_001806.1 + 32623 0.69 0.822214
Target:  5'- aGGGUGGGAGGGgGGGAaaaGAAcggGCUGg -3'
miRNA:   3'- -CCCGCCUUUCCgCUCUcg-CUUa--CGAU- -5'
5626 3' -54.8 NC_001806.1 + 151192 0.69 0.81344
Target:  5'- aGGCGG-AGGGCGAGGcGCGGcgGa-- -3'
miRNA:   3'- cCCGCCuUUCCGCUCU-CGCUuaCgau -5'
5626 3' -54.8 NC_001806.1 + 34477 0.69 0.804496
Target:  5'- aGGCGGggGGGgGGGAGaCGGGgggaaaGCa- -3'
miRNA:   3'- cCCGCCuuUCCgCUCUC-GCUUa-----CGau -5'
5626 3' -54.8 NC_001806.1 + 49498 0.69 0.804496
Target:  5'- gGGGCGGGucGGCGGuucGCGggUgGCg- -3'
miRNA:   3'- -CCCGCCUuuCCGCUcu-CGCuuA-CGau -5'
5626 3' -54.8 NC_001806.1 + 4427 0.69 0.799051
Target:  5'- gGGGUGGcccGGGCGGGGGCGGcguccgcccggggGCUGc -3'
miRNA:   3'- -CCCGCCuu-UCCGCUCUCGCUua-----------CGAU- -5'
5626 3' -54.8 NC_001806.1 + 29208 0.69 0.79539
Target:  5'- cGGGgGGAgcGaCGAGGGCGAcguGUGCg- -3'
miRNA:   3'- -CCCgCCUuuCcGCUCUCGCU---UACGau -5'
5626 3' -54.8 NC_001806.1 + 35037 0.69 0.79539
Target:  5'- gGGGgGGAGAGGgGAGAGgGGggGa-- -3'
miRNA:   3'- -CCCgCCUUUCCgCUCUCgCUuaCgau -5'
5626 3' -54.8 NC_001806.1 + 35003 0.69 0.79539
Target:  5'- gGGGgGGAGAGGgGAGAGgGGggGa-- -3'
miRNA:   3'- -CCCgCCUUUCCgCUCUCgCUuaCgau -5'
5626 3' -54.8 NC_001806.1 + 34935 0.69 0.79539
Target:  5'- gGGGgGGAGAGGgGAGAGgGGggGa-- -3'
miRNA:   3'- -CCCgCCUUUCCgCUCUCgCUuaCgau -5'
5626 3' -54.8 NC_001806.1 + 34902 0.69 0.79539
Target:  5'- gGGGgGGAGAGGgGAGAGgGGggGa-- -3'
miRNA:   3'- -CCCgCCUUUCCgCUCUCgCUuaCgau -5'
5626 3' -54.8 NC_001806.1 + 34969 0.69 0.79539
Target:  5'- gGGGgGGAGAGGgGAGAGgGGggGa-- -3'
miRNA:   3'- -CCCgCCUUUCCgCUCUCgCUuaCgau -5'
5626 3' -54.8 NC_001806.1 + 37810 0.69 0.792629
Target:  5'- cGGGCGGggGGGCaaucGccagcgucauuagcGGGGgGggUGCUu -3'
miRNA:   3'- -CCCGCCuuUCCG----C--------------UCUCgCuuACGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.