miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5627 3' -44 NC_001806.1 + 14222 0.7 0.999859
Target:  5'- gGGggGGggGGGGGAaauuAUACGAcaACUgggUCCa -3'
miRNA:   3'- -UCuuUCuuUUCCCU----UGUGUU--UGA---GGG- -5'
5627 3' -44 NC_001806.1 + 3055 0.7 0.999859
Target:  5'- --------cAGGGGGCGCAGGCUCUg -3'
miRNA:   3'- ucuuucuuuUCCCUUGUGUUUGAGGg -5'
5627 3' -44 NC_001806.1 + 34519 0.7 0.999859
Target:  5'- cGggGGGu--GGGAGCGCGGGCcgggCCg -3'
miRNA:   3'- uCuuUCUuuuCCCUUGUGUUUGa---GGg -5'
5627 3' -44 NC_001806.1 + 54260 0.7 0.99989
Target:  5'- uGAGGGAAGAGaGGGugGCGgcuuuauAGCgCCCa -3'
miRNA:   3'- uCUUUCUUUUC-CCUugUGU-------UUGaGGG- -5'
5627 3' -44 NC_001806.1 + 104784 0.7 0.999893
Target:  5'- cGGggGGAGGcuGGGAGCucACAuGC-CCCg -3'
miRNA:   3'- -UCuuUCUUUu-CCCUUG--UGUuUGaGGG- -5'
5627 3' -44 NC_001806.1 + 74792 0.69 0.999919
Target:  5'- cGGGAGAAGuucuuGCACAAACUCCa -3'
miRNA:   3'- uCUUUCUUUucccuUGUGUUUGAGGg -5'
5627 3' -44 NC_001806.1 + 41246 0.69 0.999919
Target:  5'- uGGAGccGGcGAAAGGGGACG--GGCUCCUu -3'
miRNA:   3'- -UCUU--UC-UUUUCCCUUGUguUUGAGGG- -5'
5627 3' -44 NC_001806.1 + 56686 0.69 0.999939
Target:  5'- gGGggGGAcgGGGGccCGgGAAC-CCCg -3'
miRNA:   3'- -UCuuUCUuuUCCCuuGUgUUUGaGGG- -5'
5627 3' -44 NC_001806.1 + 65441 0.69 0.999939
Target:  5'- cGAAGGGAGcGGGGGAUGCcgcGGCcCCCg -3'
miRNA:   3'- uCUUUCUUU-UCCCUUGUGu--UUGaGGG- -5'
5627 3' -44 NC_001806.1 + 108984 0.69 0.999939
Target:  5'- -cGGGGAAGGGGGAcagGCGCcu-CUCUCg -3'
miRNA:   3'- ucUUUCUUUUCCCU---UGUGuuuGAGGG- -5'
5627 3' -44 NC_001806.1 + 106809 0.69 0.999955
Target:  5'- ---cGGAGGAGGG--CACGAACUacgCCCa -3'
miRNA:   3'- ucuuUCUUUUCCCuuGUGUUUGA---GGG- -5'
5627 3' -44 NC_001806.1 + 81257 0.69 0.999955
Target:  5'- cAGAAGGAAcuccccGGGccuCACGGGgUCCCg -3'
miRNA:   3'- -UCUUUCUUuu----CCCuu-GUGUUUgAGGG- -5'
5627 3' -44 NC_001806.1 + 67702 0.69 0.999959
Target:  5'- gGGAGGGggGGGGGGgucgaaaggacacucACGCAAggcggaaccacccAC-CCCa -3'
miRNA:   3'- -UCUUUCuuUUCCCU---------------UGUGUU-------------UGaGGG- -5'
5627 3' -44 NC_001806.1 + 95296 0.69 0.999967
Target:  5'- uGggGGc--GGGGGGCGCGgcgGACgcgCCCa -3'
miRNA:   3'- uCuuUCuuuUCCCUUGUGU---UUGa--GGG- -5'
5627 3' -44 NC_001806.1 + 78526 0.68 0.999975
Target:  5'- cAGAcgcuGAGccccucGGGGGGGCGCGAggcgucaccccccGCUCCCc -3'
miRNA:   3'- -UCUuu--CUU------UUCCCUUGUGUU-------------UGAGGG- -5'
5627 3' -44 NC_001806.1 + 55090 0.68 0.999976
Target:  5'- cAGAGAcGggGGGcGGAACauGCGGACgcgcaCCCa -3'
miRNA:   3'- -UCUUU-CuuUUC-CCUUG--UGUUUGa----GGG- -5'
5627 3' -44 NC_001806.1 + 147189 0.68 0.999976
Target:  5'- cGGAAGcgGAGGaGGACGC-GGC-CCCg -3'
miRNA:   3'- uCUUUCuuUUCC-CUUGUGuUUGaGGG- -5'
5627 3' -44 NC_001806.1 + 99629 0.68 0.999976
Target:  5'- uGGAAGGAcauGGGGGCGguGGCgggCCUg -3'
miRNA:   3'- -UCUUUCUuuuCCCUUGUguUUGa--GGG- -5'
5627 3' -44 NC_001806.1 + 124103 0.68 0.999983
Target:  5'- cGGggGGucuGGGGGAUACGguGACgUCCa -3'
miRNA:   3'- -UCuuUCuuuUCCCUUGUGU--UUG-AGGg -5'
5627 3' -44 NC_001806.1 + 127404 0.68 0.999983
Target:  5'- gAGggGGggGGGGGGACGguGAUa--- -3'
miRNA:   3'- -UCuuUCuuUUCCCUUGUguUUGaggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.