miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5627 3' -44 NC_001806.1 + 141966 0.73 0.996978
Target:  5'- uGGGAGGGucGGGGGGCGCGGACg--- -3'
miRNA:   3'- -UCUUUCUuuUCCCUUGUGUUUGaggg -5'
5627 3' -44 NC_001806.1 + 25408 0.72 0.997897
Target:  5'- cGGGAGGGGgcGAGGGGcgguggugguGCGCGGGCgccCCCg -3'
miRNA:   3'- -UCUUUCUU--UUCCCU----------UGUGUUUGa--GGG- -5'
5627 3' -44 NC_001806.1 + 6414 0.72 0.99826
Target:  5'- cGGAGGAGGGGGGGACGCGGGg---- -3'
miRNA:   3'- uCUUUCUUUUCCCUUGUGUUUgaggg -5'
5627 3' -44 NC_001806.1 + 29021 0.72 0.99826
Target:  5'- uGGggGGGcgGGGGGACGCcGAC-CaCCa -3'
miRNA:   3'- -UCuuUCUuuUCCCUUGUGuUUGaG-GG- -5'
5627 3' -44 NC_001806.1 + 117632 0.72 0.999049
Target:  5'- gAGcAGGAAAAaGGggUACAGcaccgcGCUCCCg -3'
miRNA:   3'- -UCuUUCUUUUcCCuuGUGUU------UGAGGG- -5'
5627 3' -44 NC_001806.1 + 35054 0.72 0.999049
Target:  5'- gGGggGGAGAGGGGAGCcaguUAGAUUgCa -3'
miRNA:   3'- -UCuuUCUUUUCCCUUGu---GUUUGAgGg -5'
5627 3' -44 NC_001806.1 + 28674 0.72 0.999127
Target:  5'- uGGGGAGGAGccgcccgccauauuuGGGGGACGCcgugGGACcCCCg -3'
miRNA:   3'- -UCUUUCUUU---------------UCCCUUGUG----UUUGaGGG- -5'
5627 3' -44 NC_001806.1 + 145697 0.71 0.999233
Target:  5'- cGggGGAGGGGGGAugGaguACcggCCCa -3'
miRNA:   3'- uCuuUCUUUUCCCUugUguuUGa--GGG- -5'
5627 3' -44 NC_001806.1 + 108823 0.71 0.999384
Target:  5'- uGGggGGAGAAGGucGAACAUgagGAGCUgCUCg -3'
miRNA:   3'- -UCuuUCUUUUCC--CUUGUG---UUUGA-GGG- -5'
5627 3' -44 NC_001806.1 + 47470 0.71 0.99951
Target:  5'- uGguGGAAuGGGGGGACGCGuACgUCCCc -3'
miRNA:   3'- uCuuUCUU-UUCCCUUGUGUuUG-AGGG- -5'
5627 3' -44 NC_001806.1 + 77145 0.71 0.99951
Target:  5'- uGGAGGAGcucGGGGGGCGCGugg-CCCa -3'
miRNA:   3'- uCUUUCUUu--UCCCUUGUGUuugaGGG- -5'
5627 3' -44 NC_001806.1 + 49251 0.71 0.999612
Target:  5'- uGGAGGAGAuGGcGGGCgACGAGCcgCCCg -3'
miRNA:   3'- uCUUUCUUUuCC-CUUG-UGUUUGa-GGG- -5'
5627 3' -44 NC_001806.1 + 100356 0.71 0.999612
Target:  5'- uGGGAGGcc-GGGAucCACAGguaGCUCCCg -3'
miRNA:   3'- uCUUUCUuuuCCCUu-GUGUU---UGAGGG- -5'
5627 3' -44 NC_001806.1 + 128899 0.7 0.999695
Target:  5'- cGGGAGAuccucuGGGGGC-CGGGCgUCCCa -3'
miRNA:   3'- uCUUUCUuuu---CCCUUGuGUUUG-AGGG- -5'
5627 3' -44 NC_001806.1 + 76731 0.7 0.999695
Target:  5'- cAGAcGGAGAAGGc-GCGCGAGCUCg- -3'
miRNA:   3'- -UCUuUCUUUUCCcuUGUGUUUGAGgg -5'
5627 3' -44 NC_001806.1 + 136926 0.7 0.999695
Target:  5'- -------cGGGGGAGCACAGcGCUUCCg -3'
miRNA:   3'- ucuuucuuUUCCCUUGUGUU-UGAGGG- -5'
5627 3' -44 NC_001806.1 + 34485 0.7 0.999763
Target:  5'- gGGggGGAGAcggGGGGAAaGCAagGACacggCCCg -3'
miRNA:   3'- -UCuuUCUUU---UCCCUUgUGU--UUGa---GGG- -5'
5627 3' -44 NC_001806.1 + 28750 0.7 0.999816
Target:  5'- aGGGAAGAAGAGGGGucgggauccaaaGgACGGAC-CCa -3'
miRNA:   3'- -UCUUUCUUUUCCCU------------UgUGUUUGaGGg -5'
5627 3' -44 NC_001806.1 + 43728 0.7 0.999816
Target:  5'- cGGggGGGAuuGGGGugACcgAGGCgCCCu -3'
miRNA:   3'- -UCuuUCUUuuCCCUugUG--UUUGaGGG- -5'
5627 3' -44 NC_001806.1 + 48460 0.7 0.999816
Target:  5'- cGAucuGGAcauguuGGGGGACGgGGAUUCCCc -3'
miRNA:   3'- uCUu--UCUuu----UCCCUUGUgUUUGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.