miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5627 3' -44 NC_001806.1 + 99175 1.14 0.024537
Target:  5'- aAGAAAGAAAAGGGAACACAAACUCCCc -3'
miRNA:   3'- -UCUUUCUUUUCCCUUGUGUUUGAGGG- -5'
5627 3' -44 NC_001806.1 + 127943 0.84 0.752631
Target:  5'- cGAccAGGgcGAGGGcGACGCGGACUCCCg -3'
miRNA:   3'- uCU--UUCuuUUCCC-UUGUGUUUGAGGG- -5'
5627 3' -44 NC_001806.1 + 99564 0.79 0.920915
Target:  5'- cGGuuGGGAuccgguggcggcggGGGGGAACGCGGGCUCCg -3'
miRNA:   3'- -UCuuUCUU--------------UUCCCUUGUGUUUGAGGg -5'
5627 3' -44 NC_001806.1 + 95370 0.79 0.928578
Target:  5'- gAGGAAGggGcacGGGGGuuGgGAGCUCCCg -3'
miRNA:   3'- -UCUUUCuuU---UCCCUugUgUUUGAGGG- -5'
5627 3' -44 NC_001806.1 + 7309 0.78 0.949165
Target:  5'- --cGAGAAccuAGGGAACccagaguaccGCGAGCUCCCa -3'
miRNA:   3'- ucuUUCUUu--UCCCUUG----------UGUUUGAGGG- -5'
5627 3' -44 NC_001806.1 + 2860 0.77 0.965368
Target:  5'- ---cGGGGAGGGGGGCGCGGGCgUCCg -3'
miRNA:   3'- ucuuUCUUUUCCCUUGUGUUUG-AGGg -5'
5627 3' -44 NC_001806.1 + 65908 0.77 0.97193
Target:  5'- aGGAAAccGggGAGGG-ACGCAAGCUCa- -3'
miRNA:   3'- -UCUUU--CuuUUCCCuUGUGUUUGAGgg -5'
5627 3' -44 NC_001806.1 + 5230 0.76 0.977545
Target:  5'- uGGggGGAGGGGGcGAGaccCACGGAC-CCCg -3'
miRNA:   3'- -UCuuUCUUUUCC-CUU---GUGUUUGaGGG- -5'
5627 3' -44 NC_001806.1 + 103584 0.76 0.977545
Target:  5'- cGggGGGAGGGGGAAggaACGAaacACUCUCa -3'
miRNA:   3'- uCuuUCUUUUCCCUUg--UGUU---UGAGGG- -5'
5627 3' -44 NC_001806.1 + 13594 0.75 0.984353
Target:  5'- cGGGAGGcuGGGGGGCugGAACgggUCCg -3'
miRNA:   3'- uCUUUCUuuUCCCUUGugUUUGa--GGG- -5'
5627 3' -44 NC_001806.1 + 6543 0.75 0.985687
Target:  5'- gGGGcgGAGGAGGGGGGACGCGggggcggaggagggGGCUCaCCc -3'
miRNA:   3'- -UCU--UUCUUUUCCCUUGUGU--------------UUGAG-GG- -5'
5627 3' -44 NC_001806.1 + 44740 0.75 0.986231
Target:  5'- cGGuuGGAGGGGGGGGCGCcaguugcggGAACUgCCg -3'
miRNA:   3'- -UCuuUCUUUUCCCUUGUG---------UUUGAgGG- -5'
5627 3' -44 NC_001806.1 + 67537 0.75 0.986231
Target:  5'- cGAGAGAucGGGGGGCGCAgGACgcgCCg -3'
miRNA:   3'- uCUUUCUuuUCCCUUGUGU-UUGa--GGg -5'
5627 3' -44 NC_001806.1 + 34789 0.75 0.987931
Target:  5'- gGGggGGggGGGGGGGCGgGAAaccaaguaggCCCg -3'
miRNA:   3'- -UCuuUCuuUUCCCUUGUgUUUga--------GGG- -5'
5627 3' -44 NC_001806.1 + 30416 0.74 0.99414
Target:  5'- cGGggGGGccgggcgugGAGGGuGGGCACGGGCccUCCCg -3'
miRNA:   3'- -UCuuUCU---------UUUCC-CUUGUGUUUG--AGGG- -5'
5627 3' -44 NC_001806.1 + 57157 0.74 0.994997
Target:  5'- cGAGGGGAGGGGGugcGCGCAuaaagCCCa -3'
miRNA:   3'- uCUUUCUUUUCCCu--UGUGUuuga-GGG- -5'
5627 3' -44 NC_001806.1 + 26829 0.74 0.994997
Target:  5'- cGGgcGggGAGGGGGCGCcgGAGCcCCCc -3'
miRNA:   3'- uCUuuCuuUUCCCUUGUG--UUUGaGGG- -5'
5627 3' -44 NC_001806.1 + 143360 0.74 0.99531
Target:  5'- aAGGGAGGGAcGGGGGCcgGCAGaccgacggcgacaacGCUCCCc -3'
miRNA:   3'- -UCUUUCUUUuCCCUUG--UGUU---------------UGAGGG- -5'
5627 3' -44 NC_001806.1 + 110724 0.73 0.995749
Target:  5'- gGGggGGAGGAGGGA----GAACUgCCg -3'
miRNA:   3'- -UCuuUCUUUUCCCUugugUUUGAgGG- -5'
5627 3' -44 NC_001806.1 + 10397 0.73 0.996978
Target:  5'- cGGggGGAGgcGGGAGcCGgGGGgUCCCg -3'
miRNA:   3'- -UCuuUCUUuuCCCUU-GUgUUUgAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.