miRNA display CGI


Results 1 - 20 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5627 3' -44 NC_001806.1 + 2834 0.67 0.999996
Target:  5'- cGggGGcguGGAGGGGGGCGCGGGCg--- -3'
miRNA:   3'- uCuuUC---UUUUCCCUUGUGUUUGaggg -5'
5627 3' -44 NC_001806.1 + 2860 0.77 0.965368
Target:  5'- ---cGGGGAGGGGGGCGCGGGCgUCCg -3'
miRNA:   3'- ucuuUCUUUUCCCUUGUGUUUG-AGGg -5'
5627 3' -44 NC_001806.1 + 3055 0.7 0.999859
Target:  5'- --------cAGGGGGCGCAGGCUCUg -3'
miRNA:   3'- ucuuucuuuUCCCUUGUGUUUGAGGg -5'
5627 3' -44 NC_001806.1 + 4418 0.66 1
Target:  5'- cGGAGAGggGGGGuggcccGGGCGgGGGCggcguccgCCCg -3'
miRNA:   3'- -UCUUUCuuUUCC------CUUGUgUUUGa-------GGG- -5'
5627 3' -44 NC_001806.1 + 5230 0.76 0.977545
Target:  5'- uGGggGGAGGGGGcGAGaccCACGGAC-CCCg -3'
miRNA:   3'- -UCuuUCUUUUCC-CUU---GUGUUUGaGGG- -5'
5627 3' -44 NC_001806.1 + 6277 0.66 1
Target:  5'- ----cGGAAAGGGAcACGCGGACgcgggggggaaagaCCCg -3'
miRNA:   3'- ucuuuCUUUUCCCU-UGUGUUUGa-------------GGG- -5'
5627 3' -44 NC_001806.1 + 6414 0.72 0.99826
Target:  5'- cGGAGGAGGGGGGGACGCGGGg---- -3'
miRNA:   3'- uCUUUCUUUUCCCUUGUGUUUgaggg -5'
5627 3' -44 NC_001806.1 + 6455 0.67 0.999997
Target:  5'- gGGGcgGAGGAGGGGGGACGCGGGggCg- -3'
miRNA:   3'- -UCU--UUCUUUUCCCUUGUGUUUgaGgg -5'
5627 3' -44 NC_001806.1 + 6499 0.67 0.999997
Target:  5'- gGGGcgGAGGAGGGGGGACGCGGGggCg- -3'
miRNA:   3'- -UCU--UUCUUUUCCCUUGUGUUUgaGgg -5'
5627 3' -44 NC_001806.1 + 6543 0.75 0.985687
Target:  5'- gGGGcgGAGGAGGGGGGACGCGggggcggaggagggGGCUCaCCc -3'
miRNA:   3'- -UCU--UUCUUUUCCCUUGUGU--------------UUGAG-GG- -5'
5627 3' -44 NC_001806.1 + 7309 0.78 0.949165
Target:  5'- --cGAGAAccuAGGGAACccagaguaccGCGAGCUCCCa -3'
miRNA:   3'- ucuUUCUUu--UCCCUUG----------UGUUUGAGGG- -5'
5627 3' -44 NC_001806.1 + 10397 0.73 0.996978
Target:  5'- cGGggGGAGgcGGGAGcCGgGGGgUCCCg -3'
miRNA:   3'- -UCuuUCUUuuCCCUU-GUgUUUgAGGG- -5'
5627 3' -44 NC_001806.1 + 13419 0.66 1
Target:  5'- uGAccGugauGGGGAuaGCACAGuugcCUCCCa -3'
miRNA:   3'- uCUuuCuuu-UCCCU--UGUGUUu---GAGGG- -5'
5627 3' -44 NC_001806.1 + 13594 0.75 0.984353
Target:  5'- cGGGAGGcuGGGGGGCugGAACgggUCCg -3'
miRNA:   3'- uCUUUCUuuUCCCUUGugUUUGa--GGG- -5'
5627 3' -44 NC_001806.1 + 14222 0.7 0.999859
Target:  5'- gGGggGGggGGGGGAaauuAUACGAcaACUgggUCCa -3'
miRNA:   3'- -UCuuUCuuUUCCCU----UGUGUU--UGA---GGG- -5'
5627 3' -44 NC_001806.1 + 18510 0.67 0.999994
Target:  5'- uGGGAGcccuccuGGGGggUccaguCAAACUCCCc -3'
miRNA:   3'- uCUUUCuuu----UCCCuuGu----GUUUGAGGG- -5'
5627 3' -44 NC_001806.1 + 18604 0.68 0.999988
Target:  5'- ---cGGggGAGGGGGCAUc--CUCCg -3'
miRNA:   3'- ucuuUCuuUUCCCUUGUGuuuGAGGg -5'
5627 3' -44 NC_001806.1 + 19486 0.67 0.999996
Target:  5'- uGAGAGggGGcGGGAagggcgcuuGCGCuuGCgcgugCCCa -3'
miRNA:   3'- uCUUUCuuUU-CCCU---------UGUGuuUGa----GGG- -5'
5627 3' -44 NC_001806.1 + 20727 0.68 0.999983
Target:  5'- cGggGGGGcGGGGGGCcgGCGGcCUCCg -3'
miRNA:   3'- uCuuUCUUuUCCCUUG--UGUUuGAGGg -5'
5627 3' -44 NC_001806.1 + 21225 0.66 1
Target:  5'- cGGAGGAGGGcGGGGACG---AC-CCCg -3'
miRNA:   3'- uCUUUCUUUU-CCCUUGUguuUGaGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.