miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5627 3' -44 NC_001806.1 + 26171 0.67 0.999998
Target:  5'- cGGggGGAGGAGcGGccaGACGCcgaAAACgggCCCc -3'
miRNA:   3'- -UCuuUCUUUUC-CC---UUGUG---UUUGa--GGG- -5'
5627 3' -44 NC_001806.1 + 28861 0.67 0.999998
Target:  5'- gGGggGGGAGAGGGG----GAACUCg- -3'
miRNA:   3'- -UCuuUCUUUUCCCUugugUUUGAGgg -5'
5627 3' -44 NC_001806.1 + 58065 0.67 0.999998
Target:  5'- -cAGAGGcccGGGAgGC-CGAGCUCCCg -3'
miRNA:   3'- ucUUUCUuuuCCCU-UGuGUUUGAGGG- -5'
5627 3' -44 NC_001806.1 + 6499 0.67 0.999997
Target:  5'- gGGGcgGAGGAGGGGGGACGCGGGggCg- -3'
miRNA:   3'- -UCU--UUCUUUUCCCUUGUGUUUgaGgg -5'
5627 3' -44 NC_001806.1 + 6455 0.67 0.999997
Target:  5'- gGGGcgGAGGAGGGGGGACGCGGGggCg- -3'
miRNA:   3'- -UCU--UUCUUUUCCCUUGUGUUUgaGgg -5'
5627 3' -44 NC_001806.1 + 53609 0.67 0.999997
Target:  5'- gGGGAGGGAAGGGGAgaagaggagacgAgACAGAC-CgCa -3'
miRNA:   3'- -UCUUUCUUUUCCCU------------UgUGUUUGaGgG- -5'
5627 3' -44 NC_001806.1 + 83274 0.67 0.999996
Target:  5'- cGGAGGGGGuucGGGcGGGCGCGgagGAC-CCCg -3'
miRNA:   3'- -UCUUUCUUu--UCC-CUUGUGU---UUGaGGG- -5'
5627 3' -44 NC_001806.1 + 19486 0.67 0.999996
Target:  5'- uGAGAGggGGcGGGAagggcgcuuGCGCuuGCgcgugCCCa -3'
miRNA:   3'- uCUUUCuuUU-CCCU---------UGUGuuUGa----GGG- -5'
5627 3' -44 NC_001806.1 + 89398 0.67 0.999996
Target:  5'- gGGAAuguggGGAGGGGGGAAgAgAAAaaCCCa -3'
miRNA:   3'- -UCUU-----UCUUUUCCCUUgUgUUUgaGGG- -5'
5627 3' -44 NC_001806.1 + 104008 0.67 0.999996
Target:  5'- cGGAGGcgcGAGGGAcuGCAgGAGCUUCa -3'
miRNA:   3'- uCUUUCuu-UUCCCU--UGUgUUUGAGGg -5'
5627 3' -44 NC_001806.1 + 105120 0.67 0.999996
Target:  5'- cGGGAGGAuuGGGGACA---GCUUUCg -3'
miRNA:   3'- uCUUUCUUuuCCCUUGUguuUGAGGG- -5'
5627 3' -44 NC_001806.1 + 111339 0.67 0.999996
Target:  5'- gGGgcGGggGGGGGggUAUAuaaGGCcugggaUCCCa -3'
miRNA:   3'- -UCuuUCuuUUCCCuuGUGU---UUG------AGGG- -5'
5627 3' -44 NC_001806.1 + 2834 0.67 0.999996
Target:  5'- cGggGGcguGGAGGGGGGCGCGGGCg--- -3'
miRNA:   3'- uCuuUC---UUUUCCCUUGUGUUUGaggg -5'
5627 3' -44 NC_001806.1 + 32632 0.67 0.999994
Target:  5'- gGGggGGAAAAgaacGGGcuggugugcuguAACACGAGCccaCCCg -3'
miRNA:   3'- -UCuuUCUUUU----CCC------------UUGUGUUUGa--GGG- -5'
5627 3' -44 NC_001806.1 + 65291 0.67 0.999994
Target:  5'- gGGGAGGAGGAGGGG-----GGCcCCCa -3'
miRNA:   3'- -UCUUUCUUUUCCCUuguguUUGaGGG- -5'
5627 3' -44 NC_001806.1 + 32166 0.67 0.999994
Target:  5'- -uGAAGGAGGGGGGGCGgu-GCUUCUu -3'
miRNA:   3'- ucUUUCUUUUCCCUUGUguuUGAGGG- -5'
5627 3' -44 NC_001806.1 + 18510 0.67 0.999994
Target:  5'- uGGGAGcccuccuGGGGggUccaguCAAACUCCCc -3'
miRNA:   3'- uCUUUCuuu----UCCCuuGu----GUUUGAGGG- -5'
5627 3' -44 NC_001806.1 + 62247 0.67 0.999994
Target:  5'- gGGAGAGGGcuGGGGcCGCGGAaUCCa -3'
miRNA:   3'- -UCUUUCUUuuCCCUuGUGUUUgAGGg -5'
5627 3' -44 NC_001806.1 + 148233 0.68 0.999992
Target:  5'- aAGAGAcAAcGGGGGGCGCGAucagguuacgccccCUCCCc -3'
miRNA:   3'- -UCUUUcUUuUCCCUUGUGUUu-------------GAGGG- -5'
5627 3' -44 NC_001806.1 + 74720 0.68 0.999991
Target:  5'- ---------cGGGAGCGCGcgcGCUCCCu -3'
miRNA:   3'- ucuuucuuuuCCCUUGUGUu--UGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.