miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5627 3' -44 NC_001806.1 + 104784 0.7 0.999893
Target:  5'- cGGggGGAGGcuGGGAGCucACAuGC-CCCg -3'
miRNA:   3'- -UCuuUCUUUu-CCCUUG--UGUuUGaGGG- -5'
5627 3' -44 NC_001806.1 + 104008 0.67 0.999996
Target:  5'- cGGAGGcgcGAGGGAcuGCAgGAGCUUCa -3'
miRNA:   3'- uCUUUCuu-UUCCCU--UGUgUUUGAGGg -5'
5627 3' -44 NC_001806.1 + 103584 0.76 0.977545
Target:  5'- cGggGGGAGGGGGAAggaACGAaacACUCUCa -3'
miRNA:   3'- uCuuUCUUUUCCCUUg--UGUU---UGAGGG- -5'
5627 3' -44 NC_001806.1 + 100356 0.71 0.999612
Target:  5'- uGGGAGGcc-GGGAucCACAGguaGCUCCCg -3'
miRNA:   3'- uCUUUCUuuuCCCUu-GUGUU---UGAGGG- -5'
5627 3' -44 NC_001806.1 + 99629 0.68 0.999976
Target:  5'- uGGAAGGAcauGGGGGCGguGGCgggCCUg -3'
miRNA:   3'- -UCUUUCUuuuCCCUUGUguUUGa--GGG- -5'
5627 3' -44 NC_001806.1 + 99564 0.79 0.920915
Target:  5'- cGGuuGGGAuccgguggcggcggGGGGGAACGCGGGCUCCg -3'
miRNA:   3'- -UCuuUCUU--------------UUCCCUUGUGUUUGAGGg -5'
5627 3' -44 NC_001806.1 + 99175 1.14 0.024537
Target:  5'- aAGAAAGAAAAGGGAACACAAACUCCCc -3'
miRNA:   3'- -UCUUUCUUUUCCCUUGUGUUUGAGGG- -5'
5627 3' -44 NC_001806.1 + 95370 0.79 0.928578
Target:  5'- gAGGAAGggGcacGGGGGuuGgGAGCUCCCg -3'
miRNA:   3'- -UCUUUCuuU---UCCCUugUgUUUGAGGG- -5'
5627 3' -44 NC_001806.1 + 95296 0.69 0.999967
Target:  5'- uGggGGc--GGGGGGCGCGgcgGACgcgCCCa -3'
miRNA:   3'- uCuuUCuuuUCCCUUGUGU---UUGa--GGG- -5'
5627 3' -44 NC_001806.1 + 90336 0.66 0.999999
Target:  5'- cGAcGGGGcucGGGGGuacCGCGGugUCCCu -3'
miRNA:   3'- uCUuUCUU---UUCCCuu-GUGUUugAGGG- -5'
5627 3' -44 NC_001806.1 + 89398 0.67 0.999996
Target:  5'- gGGAAuguggGGAGGGGGGAAgAgAAAaaCCCa -3'
miRNA:   3'- -UCUU-----UCUUUUCCCUUgUgUUUgaGGG- -5'
5627 3' -44 NC_001806.1 + 83812 0.66 0.999999
Target:  5'- gAGGAGGggGcGGGGucgGCGCGGGaUCCg -3'
miRNA:   3'- -UCUUUCuuUuCCCU---UGUGUUUgAGGg -5'
5627 3' -44 NC_001806.1 + 83274 0.67 0.999996
Target:  5'- cGGAGGGGGuucGGGcGGGCGCGgagGAC-CCCg -3'
miRNA:   3'- -UCUUUCUUu--UCC-CUUGUGU---UUGaGGG- -5'
5627 3' -44 NC_001806.1 + 82415 0.66 1
Target:  5'- uGGAGGGAGAguAGGGGccCGC---CUCCCc -3'
miRNA:   3'- -UCUUUCUUU--UCCCUu-GUGuuuGAGGG- -5'
5627 3' -44 NC_001806.1 + 81257 0.69 0.999955
Target:  5'- cAGAAGGAAcuccccGGGccuCACGGGgUCCCg -3'
miRNA:   3'- -UCUUUCUUuu----CCCuu-GUGUUUgAGGG- -5'
5627 3' -44 NC_001806.1 + 78526 0.68 0.999975
Target:  5'- cAGAcgcuGAGccccucGGGGGGGCGCGAggcgucaccccccGCUCCCc -3'
miRNA:   3'- -UCUuu--CUU------UUCCCUUGUGUU-------------UGAGGG- -5'
5627 3' -44 NC_001806.1 + 77945 0.66 0.999999
Target:  5'- uGGAAuGggGGGGuGACGCGgcGGC-CCCg -3'
miRNA:   3'- -UCUUuCuuUUCCcUUGUGU--UUGaGGG- -5'
5627 3' -44 NC_001806.1 + 77145 0.71 0.99951
Target:  5'- uGGAGGAGcucGGGGGGCGCGugg-CCCa -3'
miRNA:   3'- uCUUUCUUu--UCCCUUGUGUuugaGGG- -5'
5627 3' -44 NC_001806.1 + 76731 0.7 0.999695
Target:  5'- cAGAcGGAGAAGGc-GCGCGAGCUCg- -3'
miRNA:   3'- -UCUuUCUUUUCCcuUGUGUUUGAGgg -5'
5627 3' -44 NC_001806.1 + 76062 0.66 0.999999
Target:  5'- cGGcuGGcgGGGGGGcuGCugGAGCgggCCCa -3'
miRNA:   3'- -UCuuUCuuUUCCCU--UGugUUUGa--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.