miRNA display CGI


Results 21 - 40 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 3' -58.3 NC_001806.1 + 150109 0.66 0.817425
Target:  5'- cGGGGcgGCCCCguccccggggACCAACCCGG-CGCc-- -3'
miRNA:   3'- -UUCU--UGGGG----------UGGUUGGGCCuGCGcag -5'
5628 3' -58.3 NC_001806.1 + 23836 0.66 0.807917
Target:  5'- -cGGGCCCgcugCGCCGcauggcgGCCUGGAUGCGcCa -3'
miRNA:   3'- uuCUUGGG----GUGGU-------UGGGCCUGCGCaG- -5'
5628 3' -58.3 NC_001806.1 + 115221 0.66 0.808789
Target:  5'- -----gCCCugCAACCCccggGGACGCGcCg -3'
miRNA:   3'- uucuugGGGugGUUGGG----CCUGCGCaG- -5'
5628 3' -58.3 NC_001806.1 + 46389 0.66 0.799997
Target:  5'- -uGGACCCC-CCGgguGgCCGGcuuuaacaaGCGCGUCu -3'
miRNA:   3'- uuCUUGGGGuGGU---UgGGCC---------UGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 148138 0.66 0.799997
Target:  5'- uGAGAcGCCCCGCCcgUCacgggGGGCGCGg- -3'
miRNA:   3'- -UUCU-UGGGGUGGuuGGg----CCUGCGCag -5'
5628 3' -58.3 NC_001806.1 + 144844 0.66 0.816568
Target:  5'- -cGGGCCCCGuCCgGACCCGcucgccggcacgcGACGCGa- -3'
miRNA:   3'- uuCUUGGGGU-GG-UUGGGC-------------CUGCGCag -5'
5628 3' -58.3 NC_001806.1 + 147324 0.66 0.825056
Target:  5'- -cGcGCCCCcCCGGCCCugagucggaggggGGGUGCGUCg -3'
miRNA:   3'- uuCuUGGGGuGGUUGGG-------------CCUGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 28125 0.66 0.791055
Target:  5'- uGGAGCCCCGC---CCCGGA-GCGa- -3'
miRNA:   3'- uUCUUGGGGUGguuGGGCCUgCGCag -5'
5628 3' -58.3 NC_001806.1 + 30740 0.66 0.799109
Target:  5'- cGGGGGCCgccucuuCCGCC-GCCgGGGcCGCGUCc -3'
miRNA:   3'- -UUCUUGG-------GGUGGuUGGgCCU-GCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 23446 0.66 0.799997
Target:  5'- ----cCCCCGcCCAGCCCGcGGCGCc-- -3'
miRNA:   3'- uucuuGGGGU-GGUUGGGC-CUGCGcag -5'
5628 3' -58.3 NC_001806.1 + 114215 0.66 0.807917
Target:  5'- ---cACCCgGCCAAUCUGGugGCcaacacgGUCa -3'
miRNA:   3'- uucuUGGGgUGGUUGGGCCugCG-------CAG- -5'
5628 3' -58.3 NC_001806.1 + 126406 0.66 0.825056
Target:  5'- cGAGGACUUgauggcaCACCGGucCCCGGAgGCGUUc -3'
miRNA:   3'- -UUCUUGGG-------GUGGUU--GGGCCUgCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 85577 0.66 0.817425
Target:  5'- aGAGAAaCCCACgGACgCGGAgauuccgacCGUGUCg -3'
miRNA:   3'- -UUCUUgGGGUGgUUGgGCCU---------GCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 20151 0.66 0.790153
Target:  5'- gGAGAGacccgccCCCCGCC-GCCCGGGCcCGcCc -3'
miRNA:   3'- -UUCUU-------GGGGUGGuUGGGCCUGcGCaG- -5'
5628 3' -58.3 NC_001806.1 + 33144 0.66 0.791055
Target:  5'- cGGGGGCCCC-UCGuCCCGGGC-CGUa -3'
miRNA:   3'- -UUCUUGGGGuGGUuGGGCCUGcGCAg -5'
5628 3' -58.3 NC_001806.1 + 5820 0.66 0.799997
Target:  5'- -cGAGCCCCGCgcGCCCGuuGGC-CGUCc -3'
miRNA:   3'- uuCUUGGGGUGguUGGGC--CUGcGCAG- -5'
5628 3' -58.3 NC_001806.1 + 28710 0.67 0.72502
Target:  5'- uGGGACCC--CCGACuCCGG-UGCGUCu -3'
miRNA:   3'- uUCUUGGGguGGUUG-GGCCuGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 126375 0.67 0.72502
Target:  5'- -uGGACCCCAgCGACCCcacGGccucCGCGUa -3'
miRNA:   3'- uuCUUGGGGUgGUUGGG---CCu---GCGCAg -5'
5628 3' -58.3 NC_001806.1 + 119361 0.67 0.73379
Target:  5'- --cGGCCCCcggcggcgacacgACCGcgGCCCaGGACGUGUCc -3'
miRNA:   3'- uucUUGGGG-------------UGGU--UGGG-CCUGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 136077 0.67 0.73476
Target:  5'- ---cGCCCCAgCAGCaccuugaCGGACGCGg- -3'
miRNA:   3'- uucuUGGGGUgGUUGg------GCCUGCGCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.