miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 3' -58.3 NC_001806.1 + 148138 0.66 0.799997
Target:  5'- uGAGAcGCCCCGCCcgUCacgggGGGCGCGg- -3'
miRNA:   3'- -UUCU-UGGGGUGGuuGGg----CCUGCGCag -5'
5628 3' -58.3 NC_001806.1 + 23836 0.66 0.807917
Target:  5'- -cGGGCCCgcugCGCCGcauggcgGCCUGGAUGCGcCa -3'
miRNA:   3'- uuCUUGGG----GUGGU-------UGGGCCUGCGCaG- -5'
5628 3' -58.3 NC_001806.1 + 24801 0.66 0.808789
Target:  5'- cGGGGGCCCUGCCGccggcgccGCCCGGGauuCGCu-- -3'
miRNA:   3'- -UUCUUGGGGUGGU--------UGGGCCU---GCGcag -5'
5628 3' -58.3 NC_001806.1 + 28125 0.66 0.791055
Target:  5'- uGGAGCCCCGC---CCCGGA-GCGa- -3'
miRNA:   3'- uUCUUGGGGUGguuGGGCCUgCGCag -5'
5628 3' -58.3 NC_001806.1 + 122188 0.66 0.825895
Target:  5'- -cGAACCgaACCAGCCCcgcaGGcAgGCGUCg -3'
miRNA:   3'- uuCUUGGggUGGUUGGG----CC-UgCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 46389 0.66 0.799997
Target:  5'- -uGGACCCC-CCGgguGgCCGGcuuuaacaaGCGCGUCu -3'
miRNA:   3'- uuCUUGGGGuGGU---UgGGCC---------UGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 6072 0.66 0.808789
Target:  5'- --cGGCCCCggggGCgGGCCCGGGCgGCGg- -3'
miRNA:   3'- uucUUGGGG----UGgUUGGGCCUG-CGCag -5'
5628 3' -58.3 NC_001806.1 + 46182 0.66 0.808789
Target:  5'- -cGGGCCCC-CCgAACCCagcgGGugGCGa- -3'
miRNA:   3'- uuCUUGGGGuGG-UUGGG----CCugCGCag -5'
5628 3' -58.3 NC_001806.1 + 23446 0.66 0.799997
Target:  5'- ----cCCCCGcCCAGCCCGcGGCGCc-- -3'
miRNA:   3'- uucuuGGGGU-GGUUGGGC-CUGCGcag -5'
5628 3' -58.3 NC_001806.1 + 66754 0.66 0.781973
Target:  5'- -cGGGCCCC-CCAGCCCcaGCucgGCGUCc -3'
miRNA:   3'- uuCUUGGGGuGGUUGGGccUG---CGCAG- -5'
5628 3' -58.3 NC_001806.1 + 4288 0.66 0.781057
Target:  5'- cGGGGcuGCCCgGCCGugaagcgGCCC-GugGCGUCg -3'
miRNA:   3'- -UUCU--UGGGgUGGU-------UGGGcCugCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 30740 0.66 0.799109
Target:  5'- cGGGGGCCgccucuuCCGCC-GCCgGGGcCGCGUCc -3'
miRNA:   3'- -UUCUUGG-------GGUGGuUGGgCCU-GCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 114215 0.66 0.807917
Target:  5'- ---cACCCgGCCAAUCUGGugGCcaacacgGUCa -3'
miRNA:   3'- uucuUGGGgUGGUUGGGCCugCG-------CAG- -5'
5628 3' -58.3 NC_001806.1 + 20151 0.66 0.790153
Target:  5'- gGAGAGacccgccCCCCGCC-GCCCGGGCcCGcCc -3'
miRNA:   3'- -UUCUU-------GGGGUGGuUGGGCCUGcGCaG- -5'
5628 3' -58.3 NC_001806.1 + 50443 0.66 0.799997
Target:  5'- ---cACCCCGCCuuUgCGGACGUGg- -3'
miRNA:   3'- uucuUGGGGUGGuuGgGCCUGCGCag -5'
5628 3' -58.3 NC_001806.1 + 147673 0.66 0.799997
Target:  5'- --cGGCUCCGCCccgggGGCCgGGGCGCGg- -3'
miRNA:   3'- uucUUGGGGUGG-----UUGGgCCUGCGCag -5'
5628 3' -58.3 NC_001806.1 + 96515 0.66 0.781973
Target:  5'- cGGGGGCCCUGCCAcUCCGG-CGCc-- -3'
miRNA:   3'- -UUCUUGGGGUGGUuGGGCCuGCGcag -5'
5628 3' -58.3 NC_001806.1 + 5820 0.66 0.799997
Target:  5'- -cGAGCCCCGCgcGCCCGuuGGC-CGUCc -3'
miRNA:   3'- uuCUUGGGGUGguUGGGC--CUGcGCAG- -5'
5628 3' -58.3 NC_001806.1 + 33144 0.66 0.791055
Target:  5'- cGGGGGCCCC-UCGuCCCGGGC-CGUa -3'
miRNA:   3'- -UUCUUGGGGuGGUuGGGCCUGcGCAg -5'
5628 3' -58.3 NC_001806.1 + 49292 0.66 0.799997
Target:  5'- cGGGAaggCCCGCgAGCCCGacgacggcGCGCGUCg -3'
miRNA:   3'- uUCUUg--GGGUGgUUGGGCc-------UGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.