miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 3' -58.3 NC_001806.1 + 98819 1.06 0.002692
Target:  5'- cAAGAACCCCACCAACCCGGACGCGUCc -3'
miRNA:   3'- -UUCUUGGGGUGGUUGGGCCUGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 72592 0.79 0.193757
Target:  5'- cAGucGCCgCCACCGACCCGGGCcCGUCg -3'
miRNA:   3'- uUCu-UGG-GGUGGUUGGGCCUGcGCAG- -5'
5628 3' -58.3 NC_001806.1 + 121908 0.77 0.241171
Target:  5'- cGAGuuGCCCCACCGuuGCCCGGGC-CGUUg -3'
miRNA:   3'- -UUCu-UGGGGUGGU--UGGGCCUGcGCAG- -5'
5628 3' -58.3 NC_001806.1 + 138141 0.76 0.291094
Target:  5'- --cAACCCCGCCAACCUccccggcuGGACGCGg- -3'
miRNA:   3'- uucUUGGGGUGGUUGGG--------CCUGCGCag -5'
5628 3' -58.3 NC_001806.1 + 119634 0.75 0.297874
Target:  5'- cAGcGCCCCACgGGCCCGGGgGCGa- -3'
miRNA:   3'- uUCuUGGGGUGgUUGGGCCUgCGCag -5'
5628 3' -58.3 NC_001806.1 + 126465 0.75 0.311093
Target:  5'- -cGAAgCCCAgCGugcgauacuucgcGCCCGGGCGCGUCc -3'
miRNA:   3'- uuCUUgGGGUgGU-------------UGGGCCUGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 94790 0.75 0.326216
Target:  5'- -uGGACCaugCGCUGGCCCGGACGCGg- -3'
miRNA:   3'- uuCUUGGg--GUGGUUGGGCCUGCGCag -5'
5628 3' -58.3 NC_001806.1 + 33365 0.74 0.364386
Target:  5'- gGGGGGCCCggagaGCCGcggcACCCGGACGCGcCc -3'
miRNA:   3'- -UUCUUGGGg----UGGU----UGGGCCUGCGCaG- -5'
5628 3' -58.3 NC_001806.1 + 145012 0.72 0.440488
Target:  5'- cGGGGCCCCACaaCGGCCCGG-CGCa-- -3'
miRNA:   3'- uUCUUGGGGUG--GUUGGGCCuGCGcag -5'
5628 3' -58.3 NC_001806.1 + 89539 0.72 0.449491
Target:  5'- cGGcGCCCCgGCCGgcgGCCCGGuuuauuCGCGUCg -3'
miRNA:   3'- uUCuUGGGG-UGGU---UGGGCCu-----GCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 57961 0.72 0.449491
Target:  5'- cAAGGcCCCCGCCucucccGCCCGGGCaGCGcCa -3'
miRNA:   3'- -UUCUuGGGGUGGu-----UGGGCCUG-CGCaG- -5'
5628 3' -58.3 NC_001806.1 + 125570 0.72 0.449491
Target:  5'- uGGGGGCaCCCACgcccgCGACCCGGACGCc-- -3'
miRNA:   3'- -UUCUUG-GGGUG-----GUUGGGCCUGCGcag -5'
5628 3' -58.3 NC_001806.1 + 6798 0.72 0.449491
Target:  5'- cAGAACCgCCguGCaCGACCCGGA-GCGUCc -3'
miRNA:   3'- uUCUUGG-GG--UG-GUUGGGCCUgCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 133527 0.72 0.467795
Target:  5'- gGAGGACgCCugCGACCgccuuaucuUGGACGCGUUu -3'
miRNA:   3'- -UUCUUGgGGugGUUGG---------GCCUGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 121394 0.72 0.467795
Target:  5'- gAAGAcCCCC-CCGGagCCGGGCGCGUg -3'
miRNA:   3'- -UUCUuGGGGuGGUUg-GGCCUGCGCAg -5'
5628 3' -58.3 NC_001806.1 + 3365 0.72 0.476156
Target:  5'- -cGGGCCCCgGCCAGCCCcgGGACGgccgccaggucgcCGUCg -3'
miRNA:   3'- uuCUUGGGG-UGGUUGGG--CCUGC-------------GCAG- -5'
5628 3' -58.3 NC_001806.1 + 142071 0.72 0.486475
Target:  5'- ---cGCCCC-CCgAACCCGGACGgGUUu -3'
miRNA:   3'- uucuUGGGGuGG-UUGGGCCUGCgCAG- -5'
5628 3' -58.3 NC_001806.1 + 4124 0.72 0.486475
Target:  5'- cGGGcGCCCC-CCAgagGCCCGGGCGgcUGUCg -3'
miRNA:   3'- -UUCuUGGGGuGGU---UGGGCCUGC--GCAG- -5'
5628 3' -58.3 NC_001806.1 + 109393 0.72 0.486475
Target:  5'- --cGACCCCGCCcccGACCCGGcgAUGgGUCg -3'
miRNA:   3'- uucUUGGGGUGG---UUGGGCC--UGCgCAG- -5'
5628 3' -58.3 NC_001806.1 + 69435 0.71 0.495947
Target:  5'- -cGGACgCCCACCGGCCaCGGACucgGCGa- -3'
miRNA:   3'- uuCUUG-GGGUGGUUGG-GCCUG---CGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.